Hello all,
I have a user who is getting the following error when analyzing a FASTQ
file using TopHat for Illumina.
TopHat v2.0.10
[bam_header_read] EOF marker is absent. The input is probably truncated.
[bam_header_read] invalid BAM binary header (this is not a BAM file).
[bam_index_core] Invalid
Hi John,
Many thanks for coming back to me on this issue. Unfortunately adding the full
path into the test did not solve the issue for me, e.g.
So for the time being I will comment these out. Many thanks again.
Kind regards,
Anne.
On 24 Feb 2015, at 04:02, John Chilton wrote:
> Yes, indeed
