On Mon, Jun 8, 2015 at 6:30 AM, Loraine Guéguen
wrote:
> Thanks for your answers !
>
> I will try "./run_tests.sh -installed" and see if it can solve the 2 first
> points. By the way, I didn't know this option (not displayed with
> run_tests.sh --help) or documented on the wiki if I'm not mistaken
Hi, Mark
This could be done - but not easily. Essentially (if I understand
correctly) you'd want to have a tool that uses a non-conventional control
(the html table and row checkboxes) to allow the user to remove selected
rows.
One of the challenges is: how to create a new (smaller) dataset and s
Hi Bjoern,
We could default to using sorted BAM files from Bismark as that is Ok with
methylkit which we use for our downstream analysis. On the other hand we still
need the unsorted BAM files for methylation extractor which we use for
visualisation.
Thanks for the reply and I'll wait for the wo
Hi,
I would like to create a wrapper for a program.
For that I would like to test it, but I just found how to
create a tool in galaxy.
I couldn't find anything about how to create a
package as a dependency.
Can someone give me some help here?
Best,
Alexander
_
Hi Alex,
here are some informations:
https://wiki.galaxyproject.org/ToolDependencyRecipes
https://wiki.galaxyproject.org/ToolDependenciesTagSets
https://wiki.galaxyproject.org/PackageRecipes
https://wiki.galaxyproject.org/SimpleRepositoryDependencies
But the best way probably is to learn from exa
Hi Björn,
thank you for your fast answer!
I already walked through these pages.
Thus I understood the basics of a dependency-file.
The problem is: I don't know how to load it into my local
galaxy installation.
The only way I can see is by uploading it to ToolShed.
But I would like to avoid that
Hi Alexander,
You can either run a local toolshed
https://wiki.galaxyproject.org/HostingALocalDevelopmentToolShed or you can
use the Galaxy TestToolShed for this purpose
https://testtoolshed.g2.bx.psu.edu/
Cheers,
Eric
2015-06-09 18:12 GMT-05:00 Alexander Vowinkel
:
> Hi Björn,
>
> thank you f
Hi Alex,
> You can either run a local toolshed
> https://wiki.galaxyproject.org/HostingALocalDevelopmentToolShed or you can
> use the Galaxy TestToolShed for this purpose
> https://testtoolshed.g2.bx.psu.edu/
I can add to this a Docker powered Galaxy Tool Shed if you like :)
Ciao,
Bjoern
> Cheer
