[galaxy-dev] Documentation of Galaxy API metadata objects

Hi all, I'm wondering if there is any documentation of the JSON structures returned by particular Galaxy REST API calls. Some aspects of the Galaxy API are effectively documented via bioblend's structure, and others are documented at http://galaxy.readthedocs.org/en/master/api_doc.html . However

Re: [galaxy-dev] Documentation of Galaxy API metadata objects

Hi Clare, I am sorry but you seem to have found the best resources already. Namely 'what dictionary keys to expect...in a particular Galaxy version' is a hard problem with the current docs. :/ We could definitely do a better job providing example calls and responses in the docs with the code, so t

Re: [galaxy-dev] not sure what I can do about this...

Repo is done and works correctly. https://toolshed.g2.bx.psu.edu/repository?repository_id=862266fc8a7cd60b&changeset_revision=41764d6a6a3c Cheers On Tue, Sep 29, 2015 at 1:47 PM Philip Mabon wrote: > Just waiting on this merge request and I will have a new version on the > toolshed. > > https:

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

Here’s the answer to my question: The ability to use associated dynamic select lists on Galaxy tool forms where selecting an option in the first select list dynamically re-renders the options in the second select list is possible after this change: https://github.com/galaxyproject/galaxy/pull/8

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

The answer for this is available here: http://dev.list.galaxyproject.org/Question-about-using-dynamic-options-and-refresh-on-change-for-rendering-2-associated-select-lists-td4667950.html#none > On Sep 20, 2015, at 9:56 PM, Greg Von Kuster wrote: > > Thanks Sam, > > I’ll repost my original que

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

If the select field did not properly render before, it should not render properly now. ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use t

Re: [galaxy-dev] Question about using dynamic options and refresh_on_change for rendering 2 associated select lists

Well I guess it doesn't matter, glad it works now. On Wed, Sep 30, 2015 at 2:47 PM, Aysam Guerler wrote: > If the select field did not properly render before, it should not render > properly now. > ___ Please keep all replies on the list by

[galaxy-dev] Picard sortSam python error inside its Java app?

If any Picard / Samtools experts can help ... Ran into a picard sortSam libc / python error that is only showing up when launched within Galaxy - AND ONLY WITH SORT_ORDER="queryname" option. I run the same command line as the tool does, but as galaxy user on command line, it runs ok?! Is there

[galaxy-dev] Query in publishing the tool

Hi there, Greetings. I have created a tool and would like to publish it in the galaxy, however I am having problems in doing that. My tool is a kind of pipeline and hence has a combination of several .xml and .py files. Now, ideally I would like to publish the tool in such a way that when somebod

[galaxy-dev] October 2015 News of the Galaxy

Hello all, The *October Galactic News * is hot off the presses. - 60 new publications, including 4 highlighted pubs - Event News