[galaxy-dev] Galaxy Start Up Error - Double Requirements, Tempita

2017-05-12 Thread Yip, Miu ki
Hi all, When attempting to start up Galaxy, via the run.sh script, we’re getting the following error: galaxyd@genomics:/galaxy$ sh run.sh Activating virtualenv at .venv Requirement already satisfied: pip>=8.1 in ./.venv/lib/python2.7/site-packages Double requirement given: Tempita==0.5.3.dev0 (f

[galaxy-dev] Unable to run workflow from command-line

2017-05-12 Thread Aarthi Mohan
Hi all, Aplogies for the long message! I am trying to execute a galaxy workflow from command-line using bioblend. The workflow invloves bwa, gatk, samtools mpileup, bcftools and works with dataset paired-end collections. The following is the script used to achieve it and I am unable to get the wo

[galaxy-dev] Fwd: Galaxy Error while Using PBS

2017-05-12 Thread Jennifer Hillman-Jackson
-- Forwarded message -- From: Wenkai Wang (Kevin) Date: Thu, May 11, 2017 at 8:01 PM Subject: Galaxy Error while Using PBS I am an engineer at a National Research and Engineering Center in Shanghai. Recently I am trying the outstanding Galaxy system developed by your team. The Ga