Re: [galaxy-dev] Tests not being run on toolsheds?

Gentlemen, The issue with the nightly testing was due to a stalled test run blocking subsequent tests. I've cleared out that blockage and a manual test run appears to have completed successfully, as should future automated test runs. As always, feel free to let us know if you encounter any

Re: [galaxy-dev] unable to install from toolshed. bounced e-mail

of your galaxy installation. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 06/01/2015 10:20 AM, Leontovich, Alexey A., Ph.D. wrote: Hello galaxy team, This e-mail was bounced, so I am sending it again. When I try to install tools (bismark, bisulfighter, bscall) to my local

Re: [galaxy-dev] Samtools 1.1 Dependency

with the same error) tool dependency definition, once that is accepted I'll be able to update the toolshed with the working code. Thank you for alerting me to that error. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 07/09/2015 05:22 PM, Hans Vasquez-Gross wrote: Hi All, I have

Re: [galaxy-dev] Bismark installation dependencies error

Yes, this is definitely related to the issue I fixed part of, and (I think) Nicola fixed the rest of. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 10/28/2015 11:46 AM, Nicola Soranzo wrote: Hi Jose, can you check that your release_15.07 is updated and contains git commit

Re: [galaxy-dev] installable revisions for repository suite definitions

Aaron, Repository suite definitions are designed to only allow the latest revision to be installable. My recommendation in this case would be to define two separate suites tagged in some descriptive way, so the individual use cases would have their appropriate suites. - Dave Bouvier http

Re: [galaxy-dev] local toolshed not working

- Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 04/28/2016 09:54 AM, Vincent Cahais wrote: >git show commit b79474083b08860923f7f28fc1e7442b53f925db Merge: 7c94ac8 5aefe1b Author: Martin Cech <cech.mar...@gmail.com> Date: Wed Apr 20 15:22:20 2016 -0400 Merge pul

Re: [galaxy-dev] local toolshed not working

And thank you for making us aware of this issue, we've updated the sample configs to include that option and its default value. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 04/28/2016 11:02 AM, Vincent Cahais wrote: It's working, Thanks Dave. Le 28/04/2016 16:40, Dave

Re: [galaxy-dev] Testtoolshed status

Steve, Thank you for reporting this issue, we've determined a potential cause and are working to correct it. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 09/02/2016 03:29 AM, Steve Cassidy wrote: I’m getting a 500 response from the testtoolshed when I try to upload a tool

Re: [galaxy-dev] Fwd: Mismatched Files

a different galaxy instance. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 07/06/2017 04:25 PM, Changsu Dong wrote: Hello, I am a galaxy user at Hunter College in New York. Recently we have encountered mismatching files throughout various tools under the same history. We

Re: [galaxy-dev] Conda dependency install problems for DESeq2 tool

dependencies, which were rebuilt with conda-build > 2.0 a few months ago. - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 08/23/2017 08:38 AM, Peter Briggs wrote: Dear devs I'm experiencing problems with the conda dependencies for the DESeq2 tool (https://toolshed.g2.bx.psu.

Re: [galaxy-dev] planemo/toolshed error, assistance request

Cicada, It appears that the ctat_metagenomics repository does exist, so that's not causing the problem. To simplify debugging this error, could you send me your repository_dependencies.xml file or a link to a gist? - Dave Bouvier http://galaxyproject.org http://usegalaxy.org On 04/13/2018