Hello Galaxy,
I have a small dilemma regarding the fasta datatype.
Currently, to my knowledge, the fasta datatype does not specify any
metadata. I was curious how I should go about changing the fasta datatype if
I wanted to include the .fai and .dict as metadata? Basically I want to
avoid
Hello Galaxy,
I'm currently working on adding some tools and am having an issue with
DELLY.
So, I am under the impression that BAM indexing happens automatically when a
BAM is uploaded. However there is no associated dataset_i.dat.bai file in
the file location in my local instance of galaxy.
to this by the following release - and you can
manually build up workflows to do this -
https://bitbucket.org/galaxy/galaxy-central/src/0468d285f89c799559926c94f3
00c42d05e8c47a/test/api/test_workflows.py?at=default#cl-544).
Thanks again,
-John
On Fri, Feb 27, 2015 at 10:04 PM, Marco Albuquerque
Hello Galaxy Dev,
I have a question regarding parallelism on a BAM file.
I have currently implemented 3 split options for the BAM datatype
1) by_rname - splits the bam into files based on the chromosome
2) by_interval - splits the bam into files based on a defined bp length,
and does so across
alaxyproject/galaxy/issues/776. Is it possible
> that upgrading Galaxy to the latest 15.07 fixes the issue?
>
> On Thu, Oct 8, 2015 at 7:40 PM, Marco Albuquerque
> <marcoalbuquerque@gmail.com> wrote:
> > Hello Galaxy Dev,
> >
> > Consider the workf
.
>
> On Sun, Oct 11, 2015 at 5:09 PM, Marco Albuquerque
> <marcoalbuquerque@gmail.com> wrote:
> > Well, my Cloudman galaxy instance is installing 15.07 revision
> 990501d2d9.
> >
> > Is there maybe a different revision I should be using?
> >
> >
