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Hi Peter,
That's great, worked perfectly.
Thank you very much,
Martin
On 10/02/2015 11:26 AM, Peter Cock wrote:
> If you have a wrapper script, then you can do it there.
>
> It is also possible in the XML directly by building a composite
> command
If you have a wrapper script, then you can do it there.
It is also possible in the XML directly by building a composite
command with && separators (which must be escaped as
&& or using CDATA), e.g.
https://github.com/galaxyproject/tools-devteam/blob/master/tools/samtool_filter2/samtool_filter2.xm
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Hi Peter,
Thanks for the reply. Are there any examples of this in action? Is it
done in the xml wrapper somewhere or do I need to write a script that
does this and then call the Rscript?
Cheers,
Martin
On 10/02/2015 11:13 AM, Peter Cock wrote:
> C
Creating symlinks with normal extensions is a common
approach here where the Galaxy filenames won't work.
Peter
On Fri, Oct 2, 2015 at 10:57 AM, Martin Vickers wrote:
>
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> Hi all,
>
> I've been tasked with getting someone's R script working in o
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Hi all,
I've been tasked with getting someone's R script working in our galaxy
installation and I'm struggling to resolve an issue with an bioconductor
function that appears to not like the galaxy naming convention (e.g.
dataset_2.dat) for the bam in