Hi Tiziano,
I think you are correct in your assumption.
If you do not need to have uploads run on pulsar, you should be able to
specify a local destination for uploads (the upload tool id is upload1) in
your job_conf.xml.
There are some examples described here:
https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L496
If you can place a copy of galaxy and a virtualenv on your pulsar server,
you could also set this up as in
https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L379
Note that I haven't tried this yet, but I think this is a good start. Let
us know if that works.
Cheers,
Marius
On 9 May 2016 at 10:42, Tiziano Flati wrote:
> Hi all,
>
> I have succesfully setup a Galaxy-Pulsar architecture and I am able to run
> jobs over datasets* already uploaded on a history*.
>
> When I try to upload a new file to the history, though, the upload job
> fails with the following error:
>
> Traceback (most recent call last):
>> File "/home/flati/pulsar/files/staging/80/tool_files/upload.py", line
>> 18, in
>> import galaxy.model # noqa
>> ImportError: No module named model
>
>
> Note: in job_conf.xml, Pulsar is the default destination:
>
>
>
>
> Does someone know what the problem is?
> I suspect that setting pulsar as the default destination causes the upload
> tool to run on Pulsar's side which, however, does not have access to
> Galaxy's lib directory (which contains the galaxy model module).
>
> Any help is very appreciated,
> Tiziano
>
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