I've never seen anything like this - have you modified Galaxy's
requirements.txt file or are you using the one that ships with Galaxy?
On Fri, May 12, 2017 at 11:20 AM, Yip, Miu ki wrote:
> Hi all,
>
> When attempting to start up Galaxy, via the run.sh script, we’re getting the
> following error:
>
> galaxyd@genomics:/galaxy$ sh run.sh
> Activating virtualenv at .venv
> Requirement already satisfied: pip>=8.1 in ./.venv/lib/python2.7/site-packages
> Double requirement given: Tempita==0.5.3.dev0 (from -r requirements.txt (line
> 155)) (already in Tempita==0.5.3dev (from -r requirements.txt (line 57)),
> name='Tempita')
>
> This occurs when the start up script is run with the —no-create-venv and
> without the flag. It looks like there are two “Tempita” items in the
> requirements.txt, if one of them is removed, it leads to another error about
> “ethtools”
>
> galaxyd@genomics:/galaxy$ sh run.sh --daemon --no-create-venv
> Activating virtualenv at .venv
> Requirement already satisfied: pip>=8.1 in ./.venv/lib/python2.7/site-packages
> ...
> Collecting crypto==1.4.1 (from -r requirements.txt (line 81))
> Using cached crypto-1.4.1-py2.py3-none-any.whl
> Requirement already satisfied: cycler==0.10.0 in
> ./.venv/lib/python2.7/site-packages (from -r requirements.txt (line 82))
> Collecting Cython==0.25.2 (from -r requirements.txt (line 83))
> Using cached Cython-0.25.2-cp27-cp27mu-manylinux1_x86_64.whl
> Requirement already satisfied: docopt==0.6.2 in
> ./.venv/lib/python2.7/site-packages (from -r requirements.txt (line 86))
> Requirement already satisfied: drmaa==0.7.6 in
> ./.venv/lib/python2.7/site-packages (from -r requirements.txt (line 88))
> Collecting ethtool==0.8 (from -r requirements.txt (line 90))
> Could not find a version that satisfies the requirement ethtool==0.8 (from
> -r requirements.txt (line 90)) (from versions: )
> No matching distribution found for ethtool==0.8 (from -r requirements.txt
> (line 90))
>
> We’re not sure if both versions of “Tempita” are required and if they are,
> how can the application be started up? Running both the run.sh and the
> run_reports.sh scripts lead to this error about “Tempita”. Has anyone
> encountered this error before?
>
> Thanks!
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