Thanks, pull request submitted:
https://github.com/galaxyproject/galaxy/pull/4121
Peter
On Mon, May 29, 2017 at 5:23 PM, Saravanaraj Ayyampalayam wrote:
> Peter,
>
> Here is the git diff output that shows the changes I made:
>
> diff --git a/lib/galaxy/jobs/runners/__init__.py
> b/lib/galaxy/
Peter,
Here is the git diff output that shows the changes I made:
diff --git a/lib/galaxy/jobs/runners/__init__.py
b/lib/galaxy/jobs/runners/__init__.py
index ebf4859..6ee51c8 100644
--- a/lib/galaxy/jobs/runners/__init__.py
+++ b/lib/galaxy/jobs/runners/__init__.py
@@ -419,7 +419,7 @@ class Job
Thanks Saravanaraj,
You should not need to change the locale, after all many Galaxy servers and
their users will be labelling their files in non-English with
"special" characters -
but perhaps en_US.UTF-8 would be safer in your case as it seems that few
people use Galaxy with en_US.iso885915 other
Peter,
You are correct. Changing string.letters to string.ascii_letters fixed it. I
had to change it in two places.
My locale is :
LANG=en_US.iso885915
LC_CTYPE="en_US.iso885915"
LC_NUMERIC="en_US.iso885915"
LC_TIME="en_US.iso885915"
LC_COLLATE="en_US.iso885915"
LC_MONETARY="en_US.iso885915"
LC
Curious, my new guess is this is position 52 a temporary string from
this expression:
string.letters + string.digits + '_'
This would fit with it being something unusual about the locale of
your Galaxy server, and my suggested hack may work - replace
string.letters with string.ascii_letters
Sepa
Peter,
The job name looks OK. Here is the output of the debug statements:
galaxy.jobs.runners.drmaa DEBUG 2017-05-29 10:37:21,423 Making job_name, tag
was '15132', plan to use u'g15132_fastq_to_fasta_python_ra...@uga.edu' with
underscores replacements
galaxy.jobs.runners.drmaa DEBUG 2017-05-29
Time for more debugging, try inserting something like this inserted
the line above into
/panfs/pstor.storage/home/qbcglab/galaxy_run/galaxy-dist/lib/galaxy/jobs/runners/drmaa.py
(having backed up the file):
log.debug( 'Making job_name, tag was %r, plan to use %r with
underscores replacements' % (g
Hello,
I updated to the latest version (17.05) galaxy code. I was updating from a very
old version.
I fixed all the issues with except one. I am getting the following error when I
submit a job.
galaxy.jobs.runners ERROR 2017-05-29 01:42:44,008 (15131) Unhandled exception
calling queue_job
Trac
