Re: [galaxy-dev] Picard installation dependency issues

2015-12-01 Thread Scott Szakonyi
Excellent! Install completed! Thanks very much. On Tue, Dec 1, 2015 at 3:57 PM, Martin Čech wrote: > This is now updated in MTS. Thanks guys. > > M. > > On Tue, Dec 1, 2015 at 4:55 PM Marius van den Beek > wrote: > >> Hi Scott, Martin, >> >> there was still a small problem in cairo. >> I made a

Re: [galaxy-dev] Picard installation dependency issues

2015-12-01 Thread Martin Čech
This is now updated in MTS. Thanks guys. M. On Tue, Dec 1, 2015 at 4:55 PM Marius van den Beek wrote: > Hi Scott, Martin, > > there was still a small problem in cairo. > I made a PR to fix this ( > https://github.com/galaxyproject/tools-devteam/pull/300) > I should have paid a bit more attentio

Re: [galaxy-dev] Picard installation dependency issues

2015-12-01 Thread Marius van den Beek
Hi Scott, Martin, there was still a small problem in cairo. I made a PR to fix this ( https://github.com/galaxyproject/tools-devteam/pull/300) I should have paid a bit more attention ... Cheers, Marius On 1 December 2015 at 22:46, Scott Szakonyi wrote: > Hi Martin, > > I've been able to resolv

Re: [galaxy-dev] Picard installation dependency issues

2015-12-01 Thread Scott Szakonyi
Hi Martin, I've been able to resolve all of the issues with Picard dependencies except for Cairo. It's still failing with this error: Tool shed repository:package_cairo_1_12_14 Tool shed repository changeset revision:f5ab0fdf3716 Tool dependency status:Error Tool dependency installation error:/bi

Re: [galaxy-dev] Picard installation dependency issues

2015-12-01 Thread Scott Szakonyi
Hi Martin, Thanks very much for your reply, and also to Marius. After some investigation, it appears that there is a firewall issue on my Galaxy server which is preventing the download of the file via FTP. I'm looking into options for that now. Best, Scott On Tue, Dec 1, 2015 at 9:56 AM, Marti

Re: [galaxy-dev] Picard installation dependency issues

2015-12-01 Thread Martin Čech
Hello Scott, thanks to Marius van den Beek the first two issues should be fixed with this PR: https://github.com/galaxyproject/tools-devteam/pull/299 These changes were already propagated to the Main Tool Shed. Note for tool developers: for future endeavours please use packages from the IUC repos

[galaxy-dev] Picard installation dependency issues

2015-11-30 Thread Scott Szakonyi
Hi all, I'm installing the latest revision of Picard tools (efc56ee1ade4). Picard installs successfully, and the tools are appearing in the appropriate menu, but several packages that install with Picard are reporting dependency issues, and I'm concerned that not all the tools will work appropriat