Thanks
I'm not worried about it replacing the system python. In general, I am just
trying to learn more about how environments are set for jobs.
Tony
On Wed, Jul 27, 2016 at 10:23 PM, Raymond Wan wrote:
> Hi Anthony,
>
>
> On Wed, Jul 27, 2016 at 11:16 PM, Tony Schreiner
> wrote:
> > I have ga
Hi Anthony,
On Wed, Jul 27, 2016 at 11:16 PM, Tony Schreiner
wrote:
> I have galaxy server 15.10 running on Ubuntu 14.04, which has python 2.7.5.
>
> I was in the process of adding matplotlib from the toolchest. It has a
> dependency on package_python_2_7.
>
> Before proceeding, I'd like to unde
I forgot to say that Galaxy installs those dependencies (tool_dependencies or
conda) beside your host system.
That will not interfere with your host libraries, binaries ...
Gildas
-
Gildas Le Corguillé - Bioinformatician/Bioanalyste
Hi Tony,
Yes, Galaxy will install a whole functional python version.
At runtime, Galaxy source some env.sh files according to the different
requirements and the bunch of requirement dependencies.
Using the tool_dependencies, indeed, Galaxy sets almost a dedicated environment
for the tools.
The
I have galaxy server 15.10 running on Ubuntu 14.04, which has python 2.7.5.
I was in the process of adding matplotlib from the toolchest. It has a
dependency on package_python_2_7.
Before proceeding, I'd like to understand a bit how that works. Does that
install a whole new python, and how then d
