Re: [galaxy-dev] how to make an exact clone of the usegalaxy.org
Hi Rui, You can also take a look at this repo https://github.com/ ARTbio/GalaxyKickStart, and in particular this bit https://github.com/ARTbio/GalaxyKickStart/tree/master/ extra-files/cloud_setup. We used this to build standalone Galaxy images on the Jetstream and Google clouds with a toolset that's as close to Main as one can get without debugging a number of failed tool installs. Even though it's primarily used for a cloud image setup, there is no reason for it cannot be used for a local machine or a VM. On Mon, Sep 26, 2016 at 11:06 AM, Martin Čech wrote: > The link in the first answer is not up to date because things moved, > however it should be probably linking to here https://github.com/galaxy > project/ephemeris/blob/master/ephemeris/shed_install.py > > Martin > > On Mon, Sep 26, 2016 at 11:02 AM Beginner TI wrote: > >> Hi Martin, >> >> Thanks! >> >> The first link doesn't really work...upon going to github it gave me 404. >> After I explored a bit more >> it says itself that it may not work now. :-( >> >> However the second one looks quite promising! >> >> Cheers, >> Rui >> >> On Mon, Sep 26, 2016 at 7:55 AM, Martin Čech wrote: >> >>> Hi Rui, >>> >>> there is no 'mirror' button to obtain Main's toolset yet, but many >>> pieces are in place to help you with this. >>> >>> Please see the following answers for guides and links: >>> >>> https://biostar.usegalaxy.org/p/11338/ >>> https://biostar.usegalaxy.org/p/19660/ >>> >>> Thanks, >>> >>> Martin >>> >>> >>> >>> >>> >>> On Mon, Sep 26, 2016 at 10:50 AM Beginner TI >>> wrote: >>> Hey Guys, I have seen this question being asked quite some times, but there wasn't any definitive answers. Today I'm doing a new local install. Upon getting the latest github repo, I still only got a small portion of galaxy main. Is there any way to include all the tools there automatically? Thanks, Rui ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ >>> >>> >> > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] how to make an exact clone of the usegalaxy.org
The link in the first answer is not up to date because things moved, however it should be probably linking to here https://github.com/galaxyproject/ephemeris/blob/master/ephemeris/shed_install.py Martin On Mon, Sep 26, 2016 at 11:02 AM Beginner TI wrote: > Hi Martin, > > Thanks! > > The first link doesn't really work...upon going to github it gave me 404. > After I explored a bit more > it says itself that it may not work now. :-( > > However the second one looks quite promising! > > Cheers, > Rui > > On Mon, Sep 26, 2016 at 7:55 AM, Martin Čech wrote: > >> Hi Rui, >> >> there is no 'mirror' button to obtain Main's toolset yet, but many pieces >> are in place to help you with this. >> >> Please see the following answers for guides and links: >> >> https://biostar.usegalaxy.org/p/11338/ >> https://biostar.usegalaxy.org/p/19660/ >> >> Thanks, >> >> Martin >> >> >> >> >> >> On Mon, Sep 26, 2016 at 10:50 AM Beginner TI >> wrote: >> >>> Hey Guys, >>> >>> I have seen this question being asked quite some times, but there wasn't >>> any definitive answers. Today I'm doing a new local install. Upon getting >>> the latest github repo, I still only got a small portion of galaxy main. Is >>> there any way to include all the tools there automatically? >>> >>> Thanks, >>> Rui >>> ___ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this >>> and other Galaxy lists, please use the interface at: >>> https://lists.galaxyproject.org/ >>> >>> To search Galaxy mailing lists use the unified search at: >>> http://galaxyproject.org/search/mailinglists/ >> >> > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] how to make an exact clone of the usegalaxy.org
Hi Martin, Thanks! The first link doesn't really work...upon going to github it gave me 404. After I explored a bit more it says itself that it may not work now. :-( However the second one looks quite promising! Cheers, Rui On Mon, Sep 26, 2016 at 7:55 AM, Martin Čech wrote: > Hi Rui, > > there is no 'mirror' button to obtain Main's toolset yet, but many pieces > are in place to help you with this. > > Please see the following answers for guides and links: > > https://biostar.usegalaxy.org/p/11338/ > https://biostar.usegalaxy.org/p/19660/ > > Thanks, > > Martin > > > > > > On Mon, Sep 26, 2016 at 10:50 AM Beginner TI wrote: > >> Hey Guys, >> >> I have seen this question being asked quite some times, but there wasn't >> any definitive answers. Today I'm doing a new local install. Upon getting >> the latest github repo, I still only got a small portion of galaxy main. Is >> there any way to include all the tools there automatically? >> >> Thanks, >> Rui >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] how to make an exact clone of the usegalaxy.org
Hi Rui, there is no 'mirror' button to obtain Main's toolset yet, but many pieces are in place to help you with this. Please see the following answers for guides and links: https://biostar.usegalaxy.org/p/11338/ https://biostar.usegalaxy.org/p/19660/ Thanks, Martin On Mon, Sep 26, 2016 at 10:50 AM Beginner TI wrote: > Hey Guys, > > I have seen this question being asked quite some times, but there wasn't > any definitive answers. Today I'm doing a new local install. Upon getting > the latest github repo, I still only got a small portion of galaxy main. Is > there any way to include all the tools there automatically? > > Thanks, > Rui > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] how to make an exact clone of the usegalaxy.org
Hey Guys, I have seen this question being asked quite some times, but there wasn't any definitive answers. Today I'm doing a new local install. Upon getting the latest github repo, I still only got a small portion of galaxy main. Is there any way to include all the tools there automatically? Thanks, Rui ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
