Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-02-09 Thread Peter Cock
Good to know :) https://github.com/peterjc/galaxy_blast/pull/77 The pull request looks good - sadly distracted by TravisCI failures from Galaxy/planemo/dependency changes. Thanks, Peter On Tue, Feb 9, 2016 at 3:28 PM, Floreline TOUCHARD wrote: > Hi, > > sorry for the late response ! I tested

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-02-09 Thread Floreline TOUCHARD
Hi, sorry for the late response ! I tested the modifications proposed in the "Allow to select multiple database" pull request and it works !!! Thanks a lot ! Floreline. P.S : I'm not familiar with all github functionnalities yet, but I will work on it ;) 2016-01-20 16:07 GMT+01:00 Peter Cock :

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-01-20 Thread Peter Cock
On Wed, Jan 20, 2016 at 2:43 PM, Gildas Le Corguillé wrote: > Hi, > > A long time ago, in a far far svn repo, we did this "multiple=true" on Peter > wrappers. > > I will try to propose it quickly :) > > Gildas Great - a pull request against https://github.com/peterjc/galaxy_blast but if your SVN

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-01-20 Thread Björn Grüning
Hi Floreline, just to add to this discussion that we were at some point in contact with Peter Rice of EMBOSS and we discussed possibility to generate more easily Galaxy wrappers out of the ACD files. I still hope this will be integrated in EMBOSS directly, so we can reuse it easily and have EMBOS

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-01-20 Thread Gildas Le Corguillé
Hi, A long time ago, in a far far svn repo, we did this "multiple=true" on Peter wrappers. I will try to propose it quickly :) Gildas - Gildas Le Corguillé - Bioinformatician/Bioanalyste Plateforme ABiMS (Analyses and Bioinformati

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-01-20 Thread Peter Cock
On Wed, Jan 20, 2016 at 2:22 PM, Floreline TOUCHARD wrote: > Thanks for the answer ! > > I compared the two versions of tools. It does not seem to be any major > differences indeed. I added these tools to my instance successfully. Great :) > Additional options in version 6 are not to be integrat

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-01-20 Thread Floreline TOUCHARD
Thanks for the answer ! I compared the two versions of tools. It does not seem to be any major differences indeed. I added these tools to my instance successfully. Additional options in version 6 are not to be integrate to my Galaxy instance immediately. I will update my XML file later if need ari

Re: [galaxy-dev] EMBOSS 6.6.0 + NCBI-BLAST+ integration

2016-01-20 Thread Peter Cock
On Wed, Jan 20, 2016 at 9:19 AM, Floreline TOUCHARD wrote: > Hi, > > I would like to add some tools of the EMBOSS suite (6.6.0) to my Galaxy > instance. It seems that the only wrapper available for Galaxy is for the > 5.0.0 version > (http://dev.list.galaxyproject.org/Galaxy-with-EMBOSS-5-or-EMBOS