Hi,
MySQL:
Server version: 5.5.44-0ubuntu0.14.04.1 (Ubuntu)
MySQL-GalaxyDB Encoding: UTF8
Galaxy: Where can I find the current release und changeset of my Galaxy
Instance?
Mit freundlichen Grüßen
Matthias Enders
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[cid:image001.png@01D03960.8254BEE0]
GERMAN SEED ALLIANCE GmbH
c/o Norddeutsche Pflanzenzucht
Hans-Georg Lembke KG
Hohenlieth, 24363 Holtsee
Tel.: +49 (0)4351/ 736-189
Fax: + 49 (0)4351/ 736-271
Mobil: +49 (0)151/ 14247360
Email: m.end...@german-seed-alliance.de<mailto:m.end...@german-seed-alliance.de>
Firmensitz Köln
Amtsgericht Köln, HRB 73844
Von: Dannon Baker [mailto:dannon.ba...@gmail.com]
Gesendet: Thursday, September 10, 2015 4:53 PM
An: Matthias Enders <m.end...@german-seed-alliance.de>
Cc: galaxy-dev@lists.galaxyproject.org
Betreff: Re: [galaxy-dev] Fatal Error while uploading a File with special
Characters
Thanks. Can you specify exactly which release (or even the exact changeset) of
the galaxy revision you're running, and what encoding the database is currently
set to? I've reproduced the error with the latest galaxy release, mysql 5.6.26
(utf8 encoding) and will get a fix out shortly, but I want to make sure I'm
testing your situation as well.
On Thu, Sep 10, 2015 at 10:14 AM, Matthias Enders
<m.end...@german-seed-alliance.de<mailto:m.end...@german-seed-alliance.de>>
wrote:
It was the name of the File:
Blühzeitpunkt.txt
(for example)
Von: Dannon Baker [mailto:dannon.ba...@gmail.com<mailto:dannon.ba...@gmail.com>]
Gesendet: Thursday, September 10, 2015 4:12 PM
An: Matthias Enders
<m.end...@german-seed-alliance.de<mailto:m.end...@german-seed-alliance.de>>
Cc:
galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>
Betreff: Re: [galaxy-dev] Fatal Error while uploading a File with special
Characters
You should definitely not have to purge a user to fix this (not that it should
happen in the first place). Was it the file with special characters, or the
name of the file?
On Thu, Sep 10, 2015 at 2:28 AM, Matthias Enders
<m.end...@german-seed-alliance.de<mailto:m.end...@german-seed-alliance.de>>
wrote:
Dear Galaxy Community,
a User of our Galaxy Platform has produced a fatal error by uploading a file
containing a German special character (ä / ü / ö / ß). This resulted in the
following status (only for the given user):
- Upload was canceled: Status was "Failed Internal Server Error (500)"
- All Histories were corrupt stating: "An error was encountered while loading
the contents."
- Tools can´t be used an stating (in Traceback):
" UnicodeDecodeError: 'utf8' codec can't decode byte 0xfc in position 5:
invalid start byte"
"Module weberror.evalexception.middleware:364 in respond"
This totally destroyed to current user and we have had to purge him in order to
get him back to work, even losing all his datasets & histories!
We are using an MySQL database as a backend. Is the Encoding of this database
the problem? If yes: Which encoding is used/supported by galaxy?
Thanks in advance!
Matthias
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