Re: [galaxy-dev] Galaxy admin access
Do I have to change host, port or username info and remove (#) Original message From: Dannon Baker Date: 06/23/2015 7:38 AM (GMT-05:00) To: "Davenport, Aneisha" , galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Galaxy admin access Ok, that should work fine. Are you now able to edit that galaxy.ini in text wrangler? If so, find the admin_users line and add your email address and any others to the line and uncomment it -- make sure it doesn't start with a # anymore. So, it'll be: admin_users = adave...@gru.edu<mailto:adave...@gru.edu>, us...@gmail.com<mailto:us...@gmail.com> On Tue, Jun 23, 2015 at 7:25 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: I created galaxy.ini using (text wrangler)by copying the contents in galaxy .ini.sample and putting galaxy.ini in that same folder. (Galaxy/config) Should I delete that file? If so what are the exact steps and commands should I place in terminal for administrative access? Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/17/2015 12:21 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access In your terminal, you'll need to navigate to the galaxy config directory (you'll see the .sample file there) first. Once there, look at a directory list and make sure that an existing galaxy.ini isn't already there. Also, please keep the galaxy-dev list cc'd instead of replying directly so that others might be able to help you as well. On Wed, Jun 17, 2015 at 12:18 PM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: I'm typing the command in terminal Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/17/2015 12:05 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Where are you executing this? You'll need to be in the galaxy/config directory, where galaxy.ini.sample exists. I'm looping the mailing list back in on this so other people might also be able to help. On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs no such file or directory Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/15/2015 3:14 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>> Subject: Re: [galaxy-dev] Galaxy admin access I'm not sure what you mean. You can edit the file using any text editor, try 'nano', or emacs or vim if you're more comfortable with those. Does the file exist or not? If not, simply "cp galaxy.ini.sample galaxy.ini" will do it. On Mon, Jun 15, 2015 at 7:27 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: How do I create it and edit it on terminal? Aneisha Davenport From: Dannon Baker [dannon.ba...@gmail.com<mailto:dannon.ba...@gmail.com>] Sent: Friday, June 12, 2015 9:44 PM To: Davenport, Aneisha; galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Hi Aneisha, When you say you cannot alter config/galaxy.ini, what do you mean? You should be able to create (if not there) and edit this file in your regular terminal on that machine. Does a different user own the file, perhaps a 'galaxy' one? If so, you could change to that user and then edit. On Fri, Jun 12, 2015 at 5:13 PM Davenport, Aneisha mailto:adave...@gru.edu><mailto:adave...@gru.edu<mailto:adave...@gru.edu>>> wrote: Hi, I work at the It service desk at the GRU Health and Science campus Ed Commons GB building and I have a customer trying to get admin access for the local installation of galaxy. We tried to follow the online instructions "In order to control your new Galaxy through the UI (installing tools, managing users, creating groups etc.) you have to become an administrator. First register as a new user and then give the user admin privileges like this: You add the Galaxy login ( email ) to the Galaxy configuration file (config/galaxy.ini). If the file does not exist you can copy it from the provided sample (config/galaxy.ini.sample). Note that you have to restart Galaxy after modifying the configuration for changes to take effect. # this should be a comma-separated list of valid Galaxy users admin_users = us...@example.com<mailto:us...@example.com><mailto:us...@example.com<mailto:us...@example.com>>,us...
Re: [galaxy-dev] Galaxy admin access
I have registered on a previous instance and I am trying to log in with that user now Original message From: Dannon Baker Date: 06/23/2015 8:30 AM (GMT-05:00) To: "Davenport, Aneisha" , galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Galaxy admin access Did you restart the server after editing galaxy.ini? That, and refreshing the main page should be all you need to do, and you'll see a new "Admin" menu in the top masthead when logged in as the admin user. And, just to confirm -- you have registered a user with the corresponding email address on this Galaxy instance, correct? On Tue, Jun 23, 2015 at 8:26 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: I followed the instructions however I still cannot tell if I have been given administration access. The galaxy screen at http://localhost:8080 looks the same Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/23/2015 8:20 AM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Sure, you can change those if you'd like for it to run on a different port, etc -- otherwise these settings will use default values (the same ones you've been using already). The only setting you'll have to change to get admin access is admin_users. On Tue, Jun 23, 2015 at 8:15 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: Do I have to change host, port or username info and remove (#) Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/23/2015 7:38 AM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Ok, that should work fine. Are you now able to edit that galaxy.ini in text wrangler? If so, find the admin_users line and add your email address and any others to the line and uncomment it -- make sure it doesn't start with a # anymore. So, it'll be: admin_users = adave...@gru.edu<mailto:adave...@gru.edu>, us...@gmail.com<mailto:us...@gmail.com> On Tue, Jun 23, 2015 at 7:25 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: I created galaxy.ini using (text wrangler)by copying the contents in galaxy .ini.sample and putting galaxy.ini in that same folder. (Galaxy/config) Should I delete that file? If so what are the exact steps and commands should I place in terminal for administrative access? Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/17/2015 12:21 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access In your terminal, you'll need to navigate to the galaxy config directory (you'll see the .sample file there) first. Once there, look at a directory list and make sure that an existing galaxy.ini isn't already there. Also, please keep the galaxy-dev list cc'd instead of replying directly so that others might be able to help you as well. On Wed, Jun 17, 2015 at 12:18 PM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: I'm typing the command in terminal Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/17/2015 12:05 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Where are you executing this? You'll need to be in the galaxy/config directory, where galaxy.ini.sample exists. I'm looping the mailing list back in on this so other people might also be able to help. On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs no such file or directory Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/15/2015 3:14 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>> Subject: Re: [galaxy-dev] Galaxy admin access I'm not sure what you mean. You can edit the file using any text editor, try 'nano', or emacs or vim if you're more comfortable with those. Does the file exist or not? If not, simply "cp galaxy.ini.sample galaxy.ini" will do it. On Mon, Jun 15, 2015 at 7:27 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: How do I create it and edit it on terminal? Aneisha Davenport ______
Re: [galaxy-dev] Galaxy admin access
I followed the instructions however I still cannot tell if I have been given administration access. The galaxy screen at http://localhost:8080 looks the same Original message From: Dannon Baker Date: 06/23/2015 8:20 AM (GMT-05:00) To: "Davenport, Aneisha" , galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Galaxy admin access Sure, you can change those if you'd like for it to run on a different port, etc -- otherwise these settings will use default values (the same ones you've been using already). The only setting you'll have to change to get admin access is admin_users. On Tue, Jun 23, 2015 at 8:15 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: Do I have to change host, port or username info and remove (#) Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/23/2015 7:38 AM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Ok, that should work fine. Are you now able to edit that galaxy.ini in text wrangler? If so, find the admin_users line and add your email address and any others to the line and uncomment it -- make sure it doesn't start with a # anymore. So, it'll be: admin_users = adave...@gru.edu<mailto:adave...@gru.edu>, us...@gmail.com<mailto:us...@gmail.com> On Tue, Jun 23, 2015 at 7:25 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: I created galaxy.ini using (text wrangler)by copying the contents in galaxy .ini.sample and putting galaxy.ini in that same folder. (Galaxy/config) Should I delete that file? If so what are the exact steps and commands should I place in terminal for administrative access? Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/17/2015 12:21 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access In your terminal, you'll need to navigate to the galaxy config directory (you'll see the .sample file there) first. Once there, look at a directory list and make sure that an existing galaxy.ini isn't already there. Also, please keep the galaxy-dev list cc'd instead of replying directly so that others might be able to help you as well. On Wed, Jun 17, 2015 at 12:18 PM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: I'm typing the command in terminal Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/17/2015 12:05 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Where are you executing this? You'll need to be in the galaxy/config directory, where galaxy.ini.sample exists. I'm looping the mailing list back in on this so other people might also be able to help. On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs no such file or directory ---- Original message ---- From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/15/2015 3:14 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>> Subject: Re: [galaxy-dev] Galaxy admin access I'm not sure what you mean. You can edit the file using any text editor, try 'nano', or emacs or vim if you're more comfortable with those. Does the file exist or not? If not, simply "cp galaxy.ini.sample galaxy.ini" will do it. On Mon, Jun 15, 2015 at 7:27 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: How do I create it and edit it on terminal? Aneisha Davenport ________________ From: Dannon Baker [dannon.ba...@gmail.com<mailto:dannon.ba...@gmail.com>] Sent: Friday, June 12, 2015 9:44 PM To: Davenport, Aneisha; galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Hi Aneisha, When you say you cannot alter config/galaxy.ini, what do you mean? You should be able to create (if not there) and edit this file in your regular terminal on that machine. Does a different user own the file, perhaps a 'galaxy' one? If so, you could change to that user and then edit. On Fri, Jun 12, 2015 at 5:13 PM Davenport, Aneisha mailto:adave...@gru.edu><mailto:adave...@gru.edu<mailto:adave...@gru.edu>>> wrote: Hi, I work at the It service desk at the GRU Health and Science campus Ed Commons GB building and I have a custome
Re: [galaxy-dev] Galaxy admin access
I created galaxy.ini using (text wrangler)by copying the contents in galaxy .ini.sample and putting galaxy.ini in that same folder. (Galaxy/config) Should I delete that file? If so what are the exact steps and commands should I place in terminal for administrative access? Original message From: Dannon Baker Date: 06/17/2015 12:21 PM (GMT-05:00) To: "Davenport, Aneisha" , galaxy-dev@lists.galaxyproject.org Subject: Re: [galaxy-dev] Galaxy admin access In your terminal, you'll need to navigate to the galaxy config directory (you'll see the .sample file there) first. Once there, look at a directory list and make sure that an existing galaxy.ini isn't already there. Also, please keep the galaxy-dev list cc'd instead of replying directly so that others might be able to help you as well. On Wed, Jun 17, 2015 at 12:18 PM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: I'm typing the command in terminal Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/17/2015 12:05 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>>, galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Where are you executing this? You'll need to be in the galaxy/config directory, where galaxy.ini.sample exists. I'm looping the mailing list back in on this so other people might also be able to help. On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs no such file or directory Original message From: Dannon Baker mailto:dannon.ba...@gmail.com>> Date: 06/15/2015 3:14 PM (GMT-05:00) To: "Davenport, Aneisha" mailto:adave...@gru.edu>> Subject: Re: [galaxy-dev] Galaxy admin access I'm not sure what you mean. You can edit the file using any text editor, try 'nano', or emacs or vim if you're more comfortable with those. Does the file exist or not? If not, simply "cp galaxy.ini.sample galaxy.ini" will do it. On Mon, Jun 15, 2015 at 7:27 AM Davenport, Aneisha mailto:adave...@gru.edu>> wrote: How do I create it and edit it on terminal? Aneisha Davenport From: Dannon Baker [dannon.ba...@gmail.com<mailto:dannon.ba...@gmail.com>] Sent: Friday, June 12, 2015 9:44 PM To: Davenport, Aneisha; galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org> Subject: Re: [galaxy-dev] Galaxy admin access Hi Aneisha, When you say you cannot alter config/galaxy.ini, what do you mean? You should be able to create (if not there) and edit this file in your regular terminal on that machine. Does a different user own the file, perhaps a 'galaxy' one? If so, you could change to that user and then edit. On Fri, Jun 12, 2015 at 5:13 PM Davenport, Aneisha mailto:adave...@gru.edu><mailto:adave...@gru.edu<mailto:adave...@gru.edu>>> wrote: Hi, I work at the It service desk at the GRU Health and Science campus Ed Commons GB building and I have a customer trying to get admin access for the local installation of galaxy. We tried to follow the online instructions "In order to control your new Galaxy through the UI (installing tools, managing users, creating groups etc.) you have to become an administrator. First register as a new user and then give the user admin privileges like this: You add the Galaxy login ( email ) to the Galaxy configuration file (config/galaxy.ini). If the file does not exist you can copy it from the provided sample (config/galaxy.ini.sample). Note that you have to restart Galaxy after modifying the configuration for changes to take effect. # this should be a comma-separated list of valid Galaxy users admin_users = us...@example.com<mailto:us...@example.com><mailto:us...@example.com<mailto:us...@example.com>>,us...@example.com<mailto:us...@example.com><mailto:us...@example.com<mailto:us...@example.com>>" but we cannot alter the config/galaxy.ini file. Can you please give us assistance? Do you run in console or Terminal (this is a Macbook Air Laptop)? Aneisha Davenport ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Galaxy admin access
Did you restart the server after editing galaxy.ini? That, and refreshing the main page should be all you need to do, and you'll see a new "Admin" menu in the top masthead when logged in as the admin user. And, just to confirm -- you have registered a user with the corresponding email address on this Galaxy instance, correct? On Tue, Jun 23, 2015 at 8:26 AM Davenport, Aneisha wrote: > I followed the instructions however I still cannot tell if I have been > given administration access. The galaxy screen at http://localhost:8080 > looks the same > > > Original message > From: Dannon Baker > Date: 06/23/2015 8:20 AM (GMT-05:00) > To: "Davenport, Aneisha" , > galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] Galaxy admin access > > Sure, you can change those if you'd like for it to run on a different > port, etc -- otherwise these settings will use default values (the same > ones you've been using already). The only setting you'll have to change to > get admin access is admin_users. > > On Tue, Jun 23, 2015 at 8:15 AM Davenport, Aneisha > wrote: > >> Do I have to change host, port or username info and remove (#) >> >> >> Original message >> From: Dannon Baker >> Date: 06/23/2015 7:38 AM (GMT-05:00) >> To: "Davenport, Aneisha" , >> galaxy-dev@lists.galaxyproject.org >> Subject: Re: [galaxy-dev] Galaxy admin access >> >> Ok, that should work fine. Are you now able to edit that galaxy.ini in >> text wrangler? If so, find the admin_users line and add your email address >> and any others to the line and uncomment it -- make sure it doesn't start >> with a # anymore. >> >> So, it'll be: >> admin_users = adave...@gru.edu, us...@gmail.com >> >> On Tue, Jun 23, 2015 at 7:25 AM Davenport, Aneisha >> wrote: >> >>> I created galaxy.ini using (text wrangler)by copying the contents in >>> galaxy .ini.sample and putting galaxy.ini in that same folder. >>> (Galaxy/config) Should I delete that file? If so what are the exact steps >>> and commands should I place in terminal for administrative access? >>> >>> >>> Original message >>> From: Dannon Baker >>> Date: 06/17/2015 12:21 PM (GMT-05:00) >>> To: "Davenport, Aneisha" , >>> galaxy-dev@lists.galaxyproject.org >>> Subject: Re: [galaxy-dev] Galaxy admin access >>> >>> In your terminal, you'll need to navigate to the galaxy config >>> directory (you'll see the .sample file there) first. Once there, look at a >>> directory list and make sure that an existing galaxy.ini isn't already >>> there. >>> >>> Also, please keep the galaxy-dev list cc'd instead of replying directly >>> so that others might be able to help you as well. >>> >>> >>> On Wed, Jun 17, 2015 at 12:18 PM Davenport, Aneisha >>> wrote: >>> >>>> I'm typing the command in terminal >>>> >>>> >>>> Original message >>>> From: Dannon Baker >>>> Date: 06/17/2015 12:05 PM (GMT-05:00) >>>> To: "Davenport, Aneisha" , >>>> galaxy-dev@lists.galaxyproject.org >>>> Subject: Re: [galaxy-dev] Galaxy admin access >>>> >>>> Where are you executing this? You'll need to be in the galaxy/config >>>> directory, where galaxy.ini.sample exists. >>>> >>>> I'm looping the mailing list back in on this so other people might also >>>> be able to help. >>>> >>>> On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha >>>> wrote: >>>> >>>>> When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs >>>>> no such file or directory >>>>> >>>>> >>>>> Original message ---- >>>>> From: Dannon Baker >>>>> Date: 06/15/2015 3:14 PM (GMT-05:00) >>>>> To: "Davenport, Aneisha" >>>>> Subject: Re: [galaxy-dev] Galaxy admin access >>>>> >>>>> I'm not sure what you mean. You can edit the file using any text >>>>> editor, try 'nano', or emacs or vim if you're more comfortable with those. >>>>> >>>>> Does the file exist or not? If not, simply "cp galaxy.ini.sample >>>>> galaxy.ini" will do it. >>>>> &g
Re: [galaxy-dev] Galaxy admin access
Sure, you can change those if you'd like for it to run on a different port, etc -- otherwise these settings will use default values (the same ones you've been using already). The only setting you'll have to change to get admin access is admin_users. On Tue, Jun 23, 2015 at 8:15 AM Davenport, Aneisha wrote: > Do I have to change host, port or username info and remove (#) > > > Original message > From: Dannon Baker > Date: 06/23/2015 7:38 AM (GMT-05:00) > To: "Davenport, Aneisha" , > galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] Galaxy admin access > > Ok, that should work fine. Are you now able to edit that galaxy.ini in > text wrangler? If so, find the admin_users line and add your email address > and any others to the line and uncomment it -- make sure it doesn't start > with a # anymore. > > So, it'll be: > admin_users = adave...@gru.edu, us...@gmail.com > > On Tue, Jun 23, 2015 at 7:25 AM Davenport, Aneisha > wrote: > >> I created galaxy.ini using (text wrangler)by copying the contents in >> galaxy .ini.sample and putting galaxy.ini in that same folder. >> (Galaxy/config) Should I delete that file? If so what are the exact steps >> and commands should I place in terminal for administrative access? >> >> >> Original message >> From: Dannon Baker >> Date: 06/17/2015 12:21 PM (GMT-05:00) >> To: "Davenport, Aneisha" , >> galaxy-dev@lists.galaxyproject.org >> Subject: Re: [galaxy-dev] Galaxy admin access >> >> In your terminal, you'll need to navigate to the galaxy config >> directory (you'll see the .sample file there) first. Once there, look at a >> directory list and make sure that an existing galaxy.ini isn't already >> there. >> >> Also, please keep the galaxy-dev list cc'd instead of replying directly >> so that others might be able to help you as well. >> >> >> On Wed, Jun 17, 2015 at 12:18 PM Davenport, Aneisha >> wrote: >> >>> I'm typing the command in terminal >>> >>> >>> Original message >>> From: Dannon Baker >>> Date: 06/17/2015 12:05 PM (GMT-05:00) >>> To: "Davenport, Aneisha" , >>> galaxy-dev@lists.galaxyproject.org >>> Subject: Re: [galaxy-dev] Galaxy admin access >>> >>> Where are you executing this? You'll need to be in the galaxy/config >>> directory, where galaxy.ini.sample exists. >>> >>> I'm looping the mailing list back in on this so other people might also >>> be able to help. >>> >>> On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha >>> wrote: >>> >>>> When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs >>>> no such file or directory >>>> >>>> >>>> Original message >>>> From: Dannon Baker >>>> Date: 06/15/2015 3:14 PM (GMT-05:00) >>>> To: "Davenport, Aneisha" >>>> Subject: Re: [galaxy-dev] Galaxy admin access >>>> >>>> I'm not sure what you mean. You can edit the file using any text >>>> editor, try 'nano', or emacs or vim if you're more comfortable with those. >>>> >>>> Does the file exist or not? If not, simply "cp galaxy.ini.sample >>>> galaxy.ini" will do it. >>>> >>>> On Mon, Jun 15, 2015 at 7:27 AM Davenport, Aneisha >>>> wrote: >>>> >>>>> How do I create it and edit it on terminal? >>>>> >>>>> Aneisha Davenport >>>>> >>>>> From: Dannon Baker [dannon.ba...@gmail.com] >>>>> Sent: Friday, June 12, 2015 9:44 PM >>>>> To: Davenport, Aneisha; galaxy-dev@lists.galaxyproject.org >>>>> Subject: Re: [galaxy-dev] Galaxy admin access >>>>> >>>>> Hi Aneisha, >>>>> >>>>> When you say you cannot alter config/galaxy.ini, what do you mean? >>>>> You should be able to create (if not there) and edit this file in your >>>>> regular terminal on that machine. >>>>> >>>>> Does a different user own the file, perhaps a 'galaxy' one? If so, >>>>> you could change to that user and then edit. >>>>> >>>>> On Fri, Jun 12, 2015 at 5:13 PM Davenport, Aneisha >>>> <mailto:adave...@gru.e
Re: [galaxy-dev] Galaxy admin access
Ok, that should work fine. Are you now able to edit that galaxy.ini in text wrangler? If so, find the admin_users line and add your email address and any others to the line and uncomment it -- make sure it doesn't start with a # anymore. So, it'll be: admin_users = adave...@gru.edu, us...@gmail.com On Tue, Jun 23, 2015 at 7:25 AM Davenport, Aneisha wrote: > I created galaxy.ini using (text wrangler)by copying the contents in > galaxy .ini.sample and putting galaxy.ini in that same folder. > (Galaxy/config) Should I delete that file? If so what are the exact steps > and commands should I place in terminal for administrative access? > > > Original message > From: Dannon Baker > Date: 06/17/2015 12:21 PM (GMT-05:00) > To: "Davenport, Aneisha" , > galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] Galaxy admin access > > In your terminal, you'll need to navigate to the galaxy config directory > (you'll see the .sample file there) first. Once there, look at a directory > list and make sure that an existing galaxy.ini isn't already there. > > Also, please keep the galaxy-dev list cc'd instead of replying directly so > that others might be able to help you as well. > > > On Wed, Jun 17, 2015 at 12:18 PM Davenport, Aneisha > wrote: > >> I'm typing the command in terminal >> >> >> Original message >> From: Dannon Baker >> Date: 06/17/2015 12:05 PM (GMT-05:00) >> To: "Davenport, Aneisha" , >> galaxy-dev@lists.galaxyproject.org >> Subject: Re: [galaxy-dev] Galaxy admin access >> >> Where are you executing this? You'll need to be in the galaxy/config >> directory, where galaxy.ini.sample exists. >> >> I'm looping the mailing list back in on this so other people might also >> be able to help. >> >> On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha >> wrote: >> >>> When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs no >>> such file or directory >>> >>> >>> Original message >>> From: Dannon Baker >>> Date: 06/15/2015 3:14 PM (GMT-05:00) >>> To: "Davenport, Aneisha" >>> Subject: Re: [galaxy-dev] Galaxy admin access >>> >>> I'm not sure what you mean. You can edit the file using any text >>> editor, try 'nano', or emacs or vim if you're more comfortable with those. >>> >>> Does the file exist or not? If not, simply "cp galaxy.ini.sample >>> galaxy.ini" will do it. >>> >>> On Mon, Jun 15, 2015 at 7:27 AM Davenport, Aneisha >>> wrote: >>> >>>> How do I create it and edit it on terminal? >>>> >>>> Aneisha Davenport >>>> >>>> From: Dannon Baker [dannon.ba...@gmail.com] >>>> Sent: Friday, June 12, 2015 9:44 PM >>>> To: Davenport, Aneisha; galaxy-dev@lists.galaxyproject.org >>>> Subject: Re: [galaxy-dev] Galaxy admin access >>>> >>>> Hi Aneisha, >>>> >>>> When you say you cannot alter config/galaxy.ini, what do you mean? You >>>> should be able to create (if not there) and edit this file in your regular >>>> terminal on that machine. >>>> >>>> Does a different user own the file, perhaps a 'galaxy' one? If so, you >>>> could change to that user and then edit. >>>> >>>> On Fri, Jun 12, 2015 at 5:13 PM Davenport, Aneisha >>> <mailto:adave...@gru.edu>> wrote: >>>> Hi, I work at the It service desk at the GRU Health and Science campus >>>> Ed Commons GB building and I have a customer trying to get admin access for >>>> the local installation of galaxy. We tried to follow the online >>>> instructions "In order to control your new Galaxy through the UI >>>> (installing tools, managing users, creating groups etc.) you have to become >>>> an administrator. First register as a new user and then give the user admin >>>> privileges like this: You add the Galaxy login ( email ) to the Galaxy >>>> configuration file (config/galaxy.ini). If the file does not exist you can >>>> copy it from the provided sample (config/galaxy.ini.sample). Note that you >>>> have to restart Galaxy after modifying the configuration for changes to >>>> take effect. >>>> >>>> >>>> # this should be a comma-separated list of valid
Re: [galaxy-dev] Galaxy admin access
In your terminal, you'll need to navigate to the galaxy config directory (you'll see the .sample file there) first. Once there, look at a directory list and make sure that an existing galaxy.ini isn't already there. Also, please keep the galaxy-dev list cc'd instead of replying directly so that others might be able to help you as well. On Wed, Jun 17, 2015 at 12:18 PM Davenport, Aneisha wrote: > I'm typing the command in terminal > > > Original message > From: Dannon Baker > Date: 06/17/2015 12:05 PM (GMT-05:00) > To: "Davenport, Aneisha" , > galaxy-dev@lists.galaxyproject.org > Subject: Re: [galaxy-dev] Galaxy admin access > > Where are you executing this? You'll need to be in the galaxy/config > directory, where galaxy.ini.sample exists. > > I'm looping the mailing list back in on this so other people might also be > able to help. > > On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha > wrote: > >> When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs no >> such file or directory >> >> >> ---- Original message ---- >> From: Dannon Baker >> Date: 06/15/2015 3:14 PM (GMT-05:00) >> To: "Davenport, Aneisha" >> Subject: Re: [galaxy-dev] Galaxy admin access >> >> I'm not sure what you mean. You can edit the file using any text >> editor, try 'nano', or emacs or vim if you're more comfortable with those. >> >> Does the file exist or not? If not, simply "cp galaxy.ini.sample >> galaxy.ini" will do it. >> >> On Mon, Jun 15, 2015 at 7:27 AM Davenport, Aneisha >> wrote: >> >>> How do I create it and edit it on terminal? >>> >>> Aneisha Davenport >>> >>> From: Dannon Baker [dannon.ba...@gmail.com] >>> Sent: Friday, June 12, 2015 9:44 PM >>> To: Davenport, Aneisha; galaxy-dev@lists.galaxyproject.org >>> Subject: Re: [galaxy-dev] Galaxy admin access >>> >>> Hi Aneisha, >>> >>> When you say you cannot alter config/galaxy.ini, what do you mean? You >>> should be able to create (if not there) and edit this file in your regular >>> terminal on that machine. >>> >>> Does a different user own the file, perhaps a 'galaxy' one? If so, you >>> could change to that user and then edit. >>> >>> On Fri, Jun 12, 2015 at 5:13 PM Davenport, Aneisha >> <mailto:adave...@gru.edu>> wrote: >>> Hi, I work at the It service desk at the GRU Health and Science campus >>> Ed Commons GB building and I have a customer trying to get admin access for >>> the local installation of galaxy. We tried to follow the online >>> instructions "In order to control your new Galaxy through the UI >>> (installing tools, managing users, creating groups etc.) you have to become >>> an administrator. First register as a new user and then give the user admin >>> privileges like this: You add the Galaxy login ( email ) to the Galaxy >>> configuration file (config/galaxy.ini). If the file does not exist you can >>> copy it from the provided sample (config/galaxy.ini.sample). Note that you >>> have to restart Galaxy after modifying the configuration for changes to >>> take effect. >>> >>> >>> # this should be a comma-separated list of valid Galaxy users >>> admin_users = us...@example.com<mailto:us...@example.com>, >>> us...@example.com<mailto:us...@example.com>" but we cannot alter the >>> config/galaxy.ini file. Can you please give us assistance? Do you run in >>> console or Terminal (this is a Macbook Air Laptop)? >>> >>> >>> Aneisha Davenport >>> ___ >>> Please keep all replies on the list by using "reply all" >>> in your mail client. To manage your subscriptions to this >>> and other Galaxy lists, please use the interface at: >>> https://lists.galaxyproject.org/ >>> >>> To search Galaxy mailing lists use the unified search at: >>> http://galaxyproject.org/search/mailinglists/ >>> >> ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Galaxy admin access
Where are you executing this? You'll need to be in the galaxy/config directory, where galaxy.ini.sample exists. I'm looping the mailing list back in on this so other people might also be able to help. On Wed, Jun 17, 2015 at 8:28 AM Davenport, Aneisha wrote: > When I type in cp galaxy.ini.sample galaxy.ini in terminal it outputs no > such file or directory > > > Original message > From: Dannon Baker > Date: 06/15/2015 3:14 PM (GMT-05:00) > To: "Davenport, Aneisha" > Subject: Re: [galaxy-dev] Galaxy admin access > > I'm not sure what you mean. You can edit the file using any text > editor, try 'nano', or emacs or vim if you're more comfortable with those. > > Does the file exist or not? If not, simply "cp galaxy.ini.sample > galaxy.ini" will do it. > > On Mon, Jun 15, 2015 at 7:27 AM Davenport, Aneisha > wrote: > >> How do I create it and edit it on terminal? >> >> Aneisha Davenport >> >> From: Dannon Baker [dannon.ba...@gmail.com] >> Sent: Friday, June 12, 2015 9:44 PM >> To: Davenport, Aneisha; galaxy-dev@lists.galaxyproject.org >> Subject: Re: [galaxy-dev] Galaxy admin access >> >> Hi Aneisha, >> >> When you say you cannot alter config/galaxy.ini, what do you mean? You >> should be able to create (if not there) and edit this file in your regular >> terminal on that machine. >> >> Does a different user own the file, perhaps a 'galaxy' one? If so, you >> could change to that user and then edit. >> >> On Fri, Jun 12, 2015 at 5:13 PM Davenport, Aneisha > <mailto:adave...@gru.edu>> wrote: >> Hi, I work at the It service desk at the GRU Health and Science campus Ed >> Commons GB building and I have a customer trying to get admin access for >> the local installation of galaxy. We tried to follow the online >> instructions "In order to control your new Galaxy through the UI >> (installing tools, managing users, creating groups etc.) you have to become >> an administrator. First register as a new user and then give the user admin >> privileges like this: You add the Galaxy login ( email ) to the Galaxy >> configuration file (config/galaxy.ini). If the file does not exist you can >> copy it from the provided sample (config/galaxy.ini.sample). Note that you >> have to restart Galaxy after modifying the configuration for changes to >> take effect. >> >> >> # this should be a comma-separated list of valid Galaxy users >> admin_users = us...@example.com<mailto:us...@example.com>, >> us...@example.com<mailto:us...@example.com>" but we cannot alter the >> config/galaxy.ini file. Can you please give us assistance? Do you run in >> console or Terminal (this is a Macbook Air Laptop)? >> >> >> Aneisha Davenport >> ___ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ >> > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Galaxy admin access
Hi Aneisha, When you say you cannot alter config/galaxy.ini, what do you mean? You should be able to create (if not there) and edit this file in your regular terminal on that machine. Does a different user own the file, perhaps a 'galaxy' one? If so, you could change to that user and then edit. On Fri, Jun 12, 2015 at 5:13 PM Davenport, Aneisha wrote: > Hi, I work at the It service desk at the GRU Health and Science campus Ed > Commons GB building and I have a customer trying to get admin access for > the local installation of galaxy. We tried to follow the online > instructions "In order to control your new Galaxy through the UI > (installing tools, managing users, creating groups etc.) you have to become > an administrator. First register as a new user and then give the user admin > privileges like this: You add the Galaxy login ( email ) to the Galaxy > configuration file (config/galaxy.ini). If the file does not exist you can > copy it from the provided sample (config/galaxy.ini.sample). Note that you > have to restart Galaxy after modifying the configuration for changes to > take effect. > > > # this should be a comma-separated list of valid Galaxy users > admin_users = us...@example.com,us...@example.com" but we cannot alter > the config/galaxy.ini file. Can you please give us assistance? Do you run > in console or Terminal (this is a Macbook Air Laptop)? > > > Aneisha Davenport > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
