Re: [galaxy-dev] Using synchronous method to upload multiple files

2015-04-16 Thread Daniele P Colobraro
Hi Daniel and John, thanks a lot for your replies. I have tried creating a galaxy.json file, but I haven't had much time, so I gave up that. But I am interested to use your suggestions. For my solution, I followed the explanations in: https://wiki.galaxyproject.org/Admin/Tools/Multiple%20Output%20

Re: [galaxy-dev] Using synchronous method to upload multiple files

2015-04-16 Thread Daniel Blankenberg
Hi Daniele, I would suggest having a look at the tools/genomespace/genomespace_importer.py/xml tool, particularly the ‘download_from_genomespace_importer’ method, it uses a comma-separated list of URLs and downloads an adds multiple files to Galaxy, with history names of “GenomeSpace importer

Re: [galaxy-dev] Using synchronous method to upload multiple files

2015-04-16 Thread John Chilton
Yeah - I am not very familiar with data source tools at all - sorry. Are you creating a galaxy.json file in upload3.py? If you are creating that file but cannot distinguish between the files - I would try adding "name" or "designation" fields to the JSON lines in that file - I would think one of th

Re: [galaxy-dev] Using synchronous method to upload multiple files

2015-04-01 Thread Daniele P Colobraro
Thanks John for your help, if I get it will I set just a external view of my files? My idea is to provide multiple files in the galaxy history. I tried to rewrite the 'galaxy.joson' file but without results. So far, I have made up just the tool below: upload3.py $report1 $report1.id $__new_file_p

Re: [galaxy-dev] Using synchronous method to upload multiple files

2015-03-29 Thread John Chilton
There was some work last summer to allow something that at least vaguely sounds like what you are trying to accomplish - though I was not involved so I probably am unable to help out much. The Trello card that was tracking progress on this can be found here - https://trello.com/c/YlADVbkI - and see