Re: [galaxy-dev] how to get raw input from GUI

2016-06-14 Thread Dooley, Damion
A general note, besides which sounds like a fine choice, a technique I've used where the form's input might have some wonky characters in it, including carriage returns, but these need to be received and processed via a command line, is to use encode(): $rules.encode('base64').replace('\n','') T

Re: [galaxy-dev] how to get raw input from GUI

2016-06-13 Thread Beginner TI
Hi Eric, Thanks for the info! I'll look into it. :-) Rui On Mon, Jun 13, 2016 at 5:20 PM, Eric Rasche wrote: > Hi Rui, > > I believe you're looking for a sanitizer. > > https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax?#A.3Csanitizer.3E_tag_set > > Hope this helps. > > > On 14. juni

Re: [galaxy-dev] how to get raw input from GUI

2016-06-13 Thread Eric Rasche
Hi Rui, I believe you're looking for a sanitizer. https://wiki.galaxyproject.org/Admin/Tools/ToolConfigSyntax?#A.3Csanitizer.3E_tag_set Hope this helps. On 14. juni 2016 00:12, Beginner TI wrote: > Hi, > > I am working on a wrapper for gatk and including > > > titl