Hi Jen,
Many thanks for this, on a related subject do you know of a way to correct a
FASTA file on the basis of a pileup (or even just on the BAM file)?
Best Wishes,
David.
__
Dr David A. Matthews
Senior Lecturer in Virology
Room E49
Department of Cellular and
Respected sir
I am using fastaq to convert fasta and quality file. But after sometime i am
getting an error and m not able to fix it.
please guide me what sholud i do??
___
The Galaxy User list should be used for the discussion of
Galaxy
Hello Luciano,
You probably need to be root to write to /bin (often done by leading the
command string with a sudo). It depends on how your system is set up.
But you don't need to put bowtie at the top level /bin, it doesn't
really belong there as a higher global function. It can go in a
It appear that you are talking about RNA-seq data analysis. If so please read a
tutorial posted by Jeremy to get an idea how the work flow has to be used. I am
sure folks would also like to know what error you are getting.
--- On Thu, 7/28/11, archana bhardwaj archana2...@gmail.com wrote:
Hello all,
The new Galaxy wiki features a Galaxy News page and RSS feed for items of
interest to the Galaxy community. The news page is a good way to get
information out to the community and is less intrusive than posting to the
Galaxy mailing lists. Anyone can create a news items by following
I am trying to use bowtie to assign reads to the s. Cerevisiae genome. I
have data from paired end SOLiD sequencing with two unique six base pair
barcodes. Can I use bowtie to make csfasta and qual files from my mixed
original data split by bar code? I know I can use the trim option to remove
6 matches
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