Re: [galaxy-user] Patch for better FASTQ description handling

2011-10-19 Thread Peter Cock
On Wed, Oct 19, 2011 at 4:53 AM, Florent Angly florent.an...@gmail.com wrote: I have had the chance to try the patch on several datasets and it looks good :) I reiterate my suggestion to pull the patch in galaxy-central. Best, Florent It looks sensible, although I would add a comment to the

Re: [galaxy-user] Patch for better FASTQ description handling

2011-10-19 Thread Daniel Blankenberg
Hi Florent, Sorry for the delay. I did try the patch out shortly after you contributed it, but it caused the functional to fail. I was able to fix the issue and allow the existing tests to start passing, but I've been bogged down lately and haven't been able to perform a more thorough review

Re: [galaxy-user] Query regarding RNA-Seq data analysis

2011-10-19 Thread Jennifer Jackson
Hello, Use Get Data - Upload or load your data into Galaxy with FTP (if large): http://galaxyproject.org/wiki/Learn/Upload%20via%20FTP Once the data is in Galaxy, this tutorial covers the general analysis path for RNA-seq data:

[galaxy-user] one error while installing galaxy

2011-10-19 Thread Li, Jilong (MU-Student)
Hi, When I installed galaxy, one error message appeared, which said that ImportError: No module named distutils.util Fetch failed. Could you tell me how to solve this problem? Thank you very much! ___ The Galaxy User list should be used

[galaxy-user] bed12 format for stitching blocks given a set of coding exon intervals

2011-10-19 Thread Amit Indap
Hi Galaxy, I am trying to stitch together MAF alignments for the coding sequence for a few genes of interest in Drosophila. I used UCSC to send the bed intervals of the coding exons of my gene and sent the output to Galaxy. But when I try and use the tool Stitch Gene blocks it complains that my

Re: [galaxy-user] Patch for better FASTQ description handling

2011-10-19 Thread Florent Angly
Peter and Daniel, thanks for the comments. On 19/10/11 23:49, Peter Cock wrote: On Wed, Oct 19, 2011 at 2:31 PM, Daniel Blankenbergd...@bx.psu.edu wrote: Hi Florent, Sorry for the delay. I did try the patch out shortly after you contributed it, but it caused the functional to fail. I was