Hi All
I've started analyzing my RNA-Seq data for two time points: Day0 and Day4 for
control and treated. I've done aligning the data to the reference genome using
Tophat. I've removed duplicates from the data sets. Could somebody please tell
me, how important is it to remove duplicates and
Hi,
I am trying to run Galaxy locally and downloaded BWA but I can't get it to run.
Do I have to use 0.5.6 or can I use 0.5.9? The make command does not work with
ver. 0.5.9.
Thanks,
Christopher W. Callaway
University of Utah
Dept. of Pediatrics
Division of Neonatology
417 Wakara Way
#
Hello Christopher,
The most current version of the BWA wrapper is designed to work with
version 0.5.9. This is true if you are pulling from the development
repository or the distribution:
http://bitbucket.org/galaxy/galaxy-central/src/21138a4a1fea/tools/sr_mapping/bwa_wrapper.py
How do I upload the Zebrafish genome from Ensembl to my user history in Galaxy?
I'm trying to map my RNA-Seq data using TopHat and need to map it to the
Ensembl version of ZFv9, but Galaxy only has the UCSC version built in. The
Ensembl version is slightly different.
Thanks,
Sheena
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