Re: [galaxy-user] Regarding .exe file

Shambhavi, Any tool that can be run from the command line, whether it be a .exe, .sh, .pl, .ph, etc, can be installed in Galaxy. All this is explained on the wiki. The best page to start would be: http://wiki.g2.bx.psu.edu/Admin/Tools Cheers, Graham Dr. Graham Etherington Bioinformatics Support

[galaxy-user] GATK wrapper in Galaxy

Hello all,   I am trying to run through the GATK pipeline on the Galaxy Test page. I have a question related to the UnifiedGenotyper wrapper page. At the bottom of the page, I choose the Advanced tab for Basic or Advanced Analysis options.    After the automatically refreshed, I choose the