[galaxy-user] How to do BLAST on Galaxy sever?

Hi, Everybody, I uploaded two complete genome sequences and hope to BLAST homologs from both genome. Does anybody know how to do BLAST search on galaxy? Thanks David ___ The Galaxy User list should be used for the discussion of Galaxy

Re: [galaxy-user] How to do BLAST on Galaxy sever?

Hi David, at first you need to predict some genes. In the tool-shed you will find some gene prediction tools. With these gene you can search against local BLAST-databases using the NCBI BLAST+ tools, included in Main-Galaxy. Hope that helps, Bjoern Hi, Everybody, I uploaded two complete

Re: [galaxy-user] user/groups/roles/permissions ???

Hello Bernd, This wiki explains the organization of roles in Galaxy: http://wiki.g2.bx.psu.edu/Learn/Security%20Features And if you need help with the Admin UI, this wiki can help: http://wiki.g2.bx.psu.edu/Admin/Interface Most administration help located in the wiki organized under this

Re: [galaxy-user] How to do BLAST on Galaxy sever?

Hi David, It sounds like you are using the public Galaxy server at http://usegalaxy.org (http://main.g2.bx.psu.edu)? A BLAST service is not available on the public instance. (Megablast is available, but for NGS query data versus a specific set of target native genomes). Bjoern is correct

Re: [galaxy-user] How to do BLAST on Galaxy sever?

On Thursday, February 9, 2012, Jennifer Jackson j...@bx.psu.edu wrote: Hi David, It sounds like you are using the public Galaxy server at http://usegalaxy.org (http://main.g2.bx.psu.edu)? A BLAST service is not available on the public instance. (Megablast is available, but for NGS query data

Re: [galaxy-user] How to do BLAST on Galaxy sever?

Hi Peter, It looks to me like there are versions both, with the Tool Shed version having the more recent date stamp. But if those extra functions are not needed, then yes, you are correct, the version included in the distribution would be enough. Please send corrections if I have any of