Re: [galaxy-user] Export to file

Hi Jeremy, That's really wonderful - thanks so much for taking the time and effort to do this! When you say large history, is there a size limit that I should be aware of, or will it handle anything that my quota can accept? Thanks, Dave On Sat, Oct 20, 2012 at 2:44 PM, Jeremy Goecks

[galaxy-user] adding references

Hello I'm trying to learn how to install my own references for alignment in galaxy. I've found posts citing the following link as being helpful https://bitbucket.org/galaxy/galaxy-central/wiki/NGSLocalSetup This however link appears broken. Can anyone redirect me? Thanks Mark This

Re: [galaxy-user] adding references

Hello Mark, The Galaxy wiki moved to: galaxyproject.org This page is now at: http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup Best, Jen Galaxy team On 10/22/12 10:20 AM, mark.r...@syngenta.com wrote: Hello I’m trying to learn how to install my own references for alignment in galaxy.

[galaxy-user] Annotation tool for prokaryotic genome

Hello Galaxy community, I would like to know if there is any available tool in Galaxy for automated gene annotation. I need gene annotation in GTF or GFF3 format to run CuffDiff on a RNA-Seq project that we are. If not, do you recommend me any software or utility. We have the genome annotated in

Re: [galaxy-user] Export to file

When you say large history, is there a size limit that I should be aware of, or will it handle anything that my quota can accept? It will handle anything your quota can accept. Best, J. ___ The Galaxy User list should be used for the

Re: [galaxy-user] Fastq to Bam conversion on paired end reads picard

Thanks! Got it to work FYI The data type was labelled as fastqcsanger although the extension wasn't .fq (was .fq_1) but it was listed in the first pull down menu after I renamed it to .fq for both files, the second option didn't automatically change to the first fastq file already. Cheers Kevin