Dear Galaxy community
I'm new to galaxy and would like to ask the following:
I have trimmed, QC'ed my data received from Illumina HiScan SQ, paired and
single end data. Mapped using Tophat, run cufflinks, cuffmerge and cuffdiff. I
would like to analyze the gene_exp.diff file by extracting the
Dear all
I have in my project single end reads (50 bp) for some samples and paired end
reads (100 bp frw and rev) for the other samples. I had to re-sequence some of
the samples of which I have paired-end reads. However the re-sequence data I
receives is single-end reads of 250 bp. Tophat
didn't open.
Any suggestions?
Kind regards
Lizex Husselmann
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Hi all
I've installed Galaxy on my Mac. The sh run.sh, run but the next step which is
launching Galaxy (http://localhost:8080) on my web browser cannot connect.
What could be the problem?
Lizex
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privilege. It must not be
Hi
I've started an alignment using the command line (Tophat v1.3.3). I've uploaded
the files (accepted.bam) onto Galaxy and upon doing the Cufflinks analysis on
the Galaxy interface, it shows an error. I had to look at the options. I've
change the options to default and run it again but still
Hi All
I've started analyzing my RNA-Seq data for two time points: Day0 and Day4 for
control and treated. I've done aligning the data to the reference genome using
Tophat. I've removed duplicates from the data sets. Could somebody please tell
me, how important is it to remove duplicates and
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