Hello,
I am having a problem running Cuffdiff on some RNA-seq data. I want to
compare 2 samples (A and B). I did Cufflinks and Cuffmerge before running
Cuffdiff. I ran Cuffdiff with the following options: Cuffmerge + Bowtie A, B
(sorted required by Cufflinks after mapped with Bowtie). But I
Hi Yan,
Would you please submit this as a bug report? It helps if you leave all
inputs undeleted in your history. Instructions:
http://wiki.g2.bx.psu.edu/Support#Reporting_tool_errors
Thanks!
Jen
Galaxy team
On 8/16/12 6:18 AM, Yan He wrote:
Hello,
I am having a problem running Cuffdiff
Hello
I am having a problem running Cuffdiff on some RNA-seq data. I want to
compare 2 of my conditions. I successfully used Cuffdiff three days ago to
compare two sets of data that are processed the exact same way (align with
Tophat and use Picard to confirm adequate alignment). I am using
Hello Erin,
This was a temporary problem due to a new filesystem we installed during
this time frame, that has since been resolved. Please try again and if
the problem persists, please send a bug report from the error dataset
using the green bug icon. This allows us to gain access to the
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