Hello Carlos,
Start by converting your BAM file to SAM, with "NGS: SAM Tools ->
BAM-to-SAM". It is probably best to include the header if you plan to
use the SAM file in downstream tools later on. If not, you can skip the
step where it is saved.
Next, to save back the SAM header into a separ
Hi,
I need to sort a BAM file by read names, I was wondering if this is
possible with a tool included in Galaxy?
I know any BAM file produced inside Galaxy will be sorted by
coordinates, but I couldn't find an option to change this to queryname
in any tool. Picard has the tool SortSam[1], perfect
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