Re: [galaxy-user] Manipulate FASTQ question

2011-09-28 Thread Jennifer Jackson
Hi Graham, This may be the long way around the transformation, but the workflow shared here will convert the identifiers without requiring any programing/regular expression knowledge: http://main.g2.bx.psu.edu/u/jen-bx-galaxy-edu/w/transform-fastq-nameidentifer To use this: 1 - log into gala

[galaxy-user] Manipulate FASTQ question

2011-09-19 Thread graham etherington (TSL)
Hi, I currently have read names with the format: @N57638:1:64JU0AAXX:1:1:1057:943 1:Y:0: and would like to change them to the format: @N57638:1:64JU0AAXX:1:1:1057:943/1 I use Manipulate FASTQ, on all reads and set 'Manipulate Reads on:' to 'Name/Identifier', ('String Translate' becomes the only o