Re: [galaxy-user] Problem with Cuffcompare

2011-10-13 Thread Chandu Galaxy
Thank you very much Jeremy. Can I have a look at the re-ran datasets? On Thu, Oct 13, 2011 at 12:12 PM, Jeremy Goecks jeremy.goe...@emory.eduwrote: Chandu, There are two problems: (1) you mapped your reads to AgamP3, but the dbkeys for all of your Cufflinks datasets is anoGam1. This

Re: [galaxy-user] Problem with Cuffcompare

2011-10-13 Thread Jeremy Goecks
Chandu, I've deleted my copy of your history to save space as your history was quite large. Please rerun Cuffcompare with the modifications I suggested below. Thanks, J. On Oct 13, 2011, at 4:26 PM, Chandu Galaxy wrote: Thank you very much Jeremy. Can I have a look at the re-ran datasets?

Re: [galaxy-user] Problem with Cuffcompare

2011-10-11 Thread Chandu Galaxy
Thank you for the response. I can't check my reference genome dataset because I'm using reference provided by Galaxy (*Mosquito (Anopheles gambiae): AgamP3*). Is there any solution? Thank you. -- Chandu On Mon, Oct 10, 2011 at 7:15 AM, Jeremy Goecks jeremy.goe...@emory.eduwrote: Tool