Hi Song,
We have alpha support for Tophat v1.3.0 and it appears to work fine with
Galaxy's Tophat wrappers. We'll upgrade and start full testing near term.
For now, when running in a local instances, we do encourage users to try
it and see if it meets their needs. Perhaps try with an
Hello everyone,
I was trying to run tophat in a local version of galaxy, but I got the
following error:
gzip: stdout: Broken pipe
[Tue Jul 19 14:10:36 2011] Processing bowtie hits
Error: could not open pipe gzip -cd
./tophat_out/tmp/left_kept_reads_missing.fq.z
It seems that when tophat is
Hello Song Li,
The file extension seems to be a mismatch.
file.gz - gzip utility
Exploring the use of gunzip or zcat are options to restore a file.z.
Hopefully this helps,
Jen
Galaxy team
On 7/19/11 11:52 AM, Song Li wrote:
Hello everyone,
I was trying to run tophat in a local version of
3 matches
Mail list logo
