Re: [galaxy-user] bed12 format for stitching blocks given a set of coding exon intervals

2011-10-20 Thread Daniel Blankenberg
Hi Amit, Without taking a look at your history, I'll have to make a guess. When you retrieve regions from UCSC, on the second step, right before you click Send query to Galaxy, make sure that you have Whole Gene selected under One record per, and that you are looking at a gene track and that

[galaxy-user] bed12 format for stitching blocks given a set of coding exon intervals

2011-10-19 Thread Amit Indap
Hi Galaxy, I am trying to stitch together MAF alignments for the coding sequence for a few genes of interest in Drosophila. I used UCSC to send the bed intervals of the coding exons of my gene and sent the output to Galaxy. But when I try and use the tool Stitch Gene blocks it complains that my