Re: [galaxy-user] downloading (and renaming) output files from Galaxy public server

2012-01-14 Thread Richard Mark White
Hi,   I have generated a transcript file using cufflinks for the human (hg19) or zebrafish(zv9) assemblies.  When I try to display the cufflinks "assembled transcripts" in UCSC I get this error in the UCSC browser and it wont display the transcripts. human: GFF/GTF group NM_005638 on chrX+, thi

Re: [galaxy-user] downloading (and renaming) output files from Galaxy public server

2011-11-07 Thread Jennifer Jackson
Hi Rich, This is a good question! Maybe people have been asking about this. To download data with a unix line command method, please try wget or curl, for example: unix% wget 'url_for_the_dataset' or unix% wget 'url_for_the_history' To capture the url for a dataset, right click on the disk

[galaxy-user] downloading (and renaming) output files from Galaxy public server

2011-11-07 Thread Richard Mark White
Hi,  I am using the galaxy public server.  Is there a way to access output files (via ftp, perhaps) so I can bulk download them to my computer? I am over my quota and want to get data off of Galaxy but prefer not to do this all one at a time.    Similarly, is there a way to access a directory (vi