Re: [galaxy-user] trimming illumina reads from 3' without considering quality score

2013-05-01 Thread Jennifer Jackson
Hi Mathew, Please see the tool 'NGS: QC and manipulation -> FASTQ Trimmer by column'. Make sure your data is in ".fastqsanger" format first - either assigned or through grooming: See "FASTQ": http://wiki.galaxyproject.org/Support#Dataset_special_cases Take care, Jen Galaxy team On 5/1/13 7:

[galaxy-user] trimming illumina reads from 3' without considering quality score

2013-05-01 Thread Mathew Bunj
Is it possible to trim certain number of bases from 3' end with taking into  consideration quality of reads. To explain it further, I want to remove 10bases from 3 ' end of all reads and keep first forty. Thanks ___ The Galaxy User list shou