[galaxy-user] samtools output

Hello, I am having trouble replicating the great output you get after running samtools Filter pileup on coverage snps with ten columns (with consensus) when I try to run samtools locally on my computer. Unfortunately we are unable to use Galaxy with our new data as our files are too large to

Re: [galaxy-user] samtools output

As an alternative, you can easily install Galaxy on your own computer to negate the upload time.. it's very easy if you have a *nix system: https://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy -K On Thu, Jul 7, 2011 at 11:12 PM, Alison Gardner alison.gard...@adelaide.edu.au wrote: Hello,

[galaxy-user] fastx toolkit on solid qual file

Hi all, I noticed Galaxy could parse qual file and output kinds of stats, which is said to be based on fastx toolkit. Yet fastx_quality_stats in fastx toolkit doesn't work on qual file of solid. Anyone has idea about the trick? Thanks. Xin Zheng

[galaxy-user] Passing/Referencing arguments from XML to R script while using XML conditional tag

Hi, This may appear as a very basic question. I: I have in the past used name as the object that allows the argument reference to passed from XML to Rscript running in the background. However I am currently using a conditional tag that makes this slightly incomprehensible. My command line

[galaxy-user] Galaxy Has a New Wiki

Hello all, It is my pleasure to announce that Galaxy has a new wiki: http://galaxyproject.org/wiki. This wiki contains all the content from the old bitbucket wiki, plus a bunch of new content (most of which is still work in progress). The new wiki is based on MoinMoin and includes several new