Re: [galaxy-user] ftp

2012-03-20 Thread Nate Coraor
On Mar 20, 2012, at 8:13 AM, Richard Mark White wrote: Hi, Is anyone else having trouble connecting to main.g2.bx.psu.edu for FTP uploads? I cannot seem to connect since yesterday. Hi Rich, It's back up now. --nate Rich ___

Re: [galaxy-user] [galaxy-dev] Tophat error

2012-03-20 Thread Jennifer Jackson
Hi David, I don't know if you are still having this problem or not, but I did a web search and found this thread on seqanswers from 2/16 that seems like a good match to the problem you were having: http://seqanswers.com/forums/showthread.php?p=65085 These scientists resolved the problem by

Re: [galaxy-user] Cuffdiff result P and q values

2012-03-20 Thread Jennifer Jackson
Hello Ateeq, It looks like you are working with a bacterial genome. There has been some limited discussion on the Galaxy mailing list about using RNA-seq tools with circular genomes, but the best resources are probably the tool documentation itself (e.g.