Re: [galaxy-user] Galaxy for gene expression comparison

2011-01-18 Thread Jeremy Goecks
> I am comparing RNA expression in two groups of rats, a drug treated group > against a control group. There are 10 biological replicates in each group. I > am unsure of how to flow this analysis through Galaxy using Tophat followed > by Cufflinks/compare/diff. Should the files for each group

Re: [galaxy-user] Order of input files when creating a workflow.

2011-01-18 Thread Dannon Baker
Thanks Victor. This is fixed in changeset 4870:65dc28ab157b. This is not on the main galaxy server yet, but when we update you'll see workflow steps preserve an order based on the distance from the top left corner of the workflow editor upon saving. This change will not affect previously save

[galaxy-user] Galaxy for gene expression comparison

2011-01-18 Thread Martin, David A.
Hello, I am comparing RNA expression in two groups of rats, a drug treated group against a control group. There are 10 biological replicates in each group. I am unsure of how to flow this analysis through Galaxy using Tophat followed by Cufflinks/compare/diff. Should the files for each group

[galaxy-user] "interval" attribute for Input?

2011-01-18 Thread Sonali Amonkar
Hi, Currently I am building a workflow which splits a file, say File 1 into chunks of files say File1.0, File1.1, File1.2. I used the interval attribute to have multiple outputs and got the chunks created successfully. However, now I want to connect another tool to this, which Reads multiple

Re: [galaxy-user] Delete data library manually

2011-01-18 Thread Jean-Baptiste Denis
On 01/17/2011 05:36 PM, Greg Von Kuster wrote: > Hello Jean-Baptiste, > > Thanks very much for bringing these issues to our attention. > > In change set 4860:d7162c6046fb, we've added exception handling around > displaying a data library so an error message is displayed rather than the > server