[galaxy-user] the original subject for the thread

2011-06-14 Thread David Wang
-Original Message- From: galaxy-user-boun...@lists.bx.psu.edu [mailto:galaxy-user-boun...@lists.bx.psu.edu] On Behalf Of galaxy-user-requ...@lists.bx.psu.edu Sent: Tuesday, June 14, 2011 9:00 AM To: galaxy-user@lists.bx.psu.edu Subject: galaxy-user Digest, Vol 60, Issue 14 Send

[galaxy-user] can I merge histories?

2011-06-14 Thread Robert Curtis Hendrickson
Folks, Is there some way I can merge histories? I ran a workflow on 3 different samples in one history, each time putting them in a different history with the same name. However, Galaxy created 3 new histories, each with the same name! But I need the data in the same history to compare and

[galaxy-user] software request

2011-06-14 Thread Christopher Balakrishnan
Hi there, I noticed on Seqanswers there was a post inquiring about the potential addition of DE-Seq (Anders Huber) to the growing stack of tools available in galaxy. I for one would love to see this integrated. I typically use it in combination with HT-Seq, a set of python scripts also

Re: [galaxy-user] software request

2011-06-14 Thread Philippe Lefebvre
Hi Chris You may find DESeq at the Galaxy website http://galaxy.fml.mpg.de/ Le 14/06/2011 19:28, Christopher Balakrishnan a écrit : Hi there, I noticed on Seqanswers there was a post inquiring about the potential addition of DE-Seq (Anders Huber) to the growing stack of tools available in

Re: [galaxy-user] working collaboratively in a history: How To?

2011-06-14 Thread Jennifer Jackson
Hi Curtis, It may be helpful if I first help to clarify how the history/dataset/workflows are organized. 1 - When a dataset is moved (through either method), internal linkage is not preserved. You could resolve this in two ways: a - By annotating where the moved result dataset came from.

[galaxy-user] Error running latest Galaxy Distribution: numpy.dtype exception

2011-06-14 Thread Michael Steder
I'm just following the documentation here: https://bitbucket.org/galaxy/galaxy-central/wiki/GetGalaxy And I ran into the following error: $ hg clone https://bitbucket.org/galaxy/galaxy-dist $ cd galaxy-dist $ sh run.sh Fetch successful. Traceback (most recent call last): File