Re: [galaxy-user] latest ubuntu version for full unified install

Joseph We are already quite a while up and running the central and dist version on Ubuntu 10.10 x64 server without any problem. I didn't like the new desktop of 11 but it seemed to work without any trouble there as well... Please note the version of python in combination with R (if you want to

[galaxy-user] Cuffcompare .tmap file

Dear all, I am trying to run Cufflinks installation in Galaxy on Solexa RNAseq samples from HeLa cells. Running Cuffcompare, according to the manual, should produce a tmap file, listing FMI values for detected isoforms. However, my files only have either 100 or 0 in FMI field. And FPKM column

Re: [galaxy-user] Text Manipulation Compute c1[1:c1.find(()] fails

Hello Robert, This tool does sanitize many of the characters required to build this type of regular expression. Some changes to a few of the Text Manipulation tools have been discussed, but nothing is planned for the near term. For now, the most expedient solution is for you to download the

[galaxy-user] calculating percent coverage over the target genome

Hi Does anyone know how to calculate how much of a genome was covered by an alignment irrespective of the depth at each base? Cheers David ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features