So, I'm trying to setup a smooth pathway for our users to import their
NGS data into Galaxy. I'd hoped for a solution that would require zero
interaction with an administrator, but things seem more awkward than
they should be:
1. We can automagically push produced NGS data into a user import
Hello Seth,
It sounds like there may be also reads joining with more than one exon -
so there is a many-to-many relationship in the output. This would not be
uncommon (especially if there are multiple reads per gene cluster) and
would result in an input read being reported 1 time in the
Are the permissions on /usr/local/apache/htdocs/galaxy correct? (ie, are
they readable by the apache user account).
On 4 August 2011 20:55, Sridhar A Malkaram smalkar...@unl.edu wrote:
Hi,
I have been using galaxy succesfully for my work using its internal
web-server. Recently I wanted to
Hi Ximena,
I have placed this request into a ticket for easier tracking:
https://bitbucket.org/galaxy/galaxy-central/issue/637
Thanks again for the suggestion,
Jen
Galaxy team
On 5/31/11 6:43 AM, Jennifer Jackson wrote:
Hello Ximena,
Thank you for bring this to our attention, we are able to
Hello Mike,
You may be interested in the wrapper for TMAP that has been added to the
Tool Shed for use with local installs. Search for tmap to locate the tool.
http://galaxyproject.org/Tool%20Shed
Great question, thank you for your patience while we reviewed,
Best,
Jen
Galaxy team
On
Hi Mete,
This FAQ has a workflow for sorting a Bowtie (or any) SAM file for
Cufflinks:
http://main.g2.bx.psu.edu/u/jeremy/p/transcriptome-analysis-faq#faq2
Thanks!
Jen
Galaxy team
On 8/4/11 10:27 AM, Mete Civelek wrote:
Hi,
I'm trying to get read counts or FPKM values for my miRNA NGS
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