Re: [galaxy-user] Text Editing

2011-12-09 Thread Lucy A. Skrabanek
Thanks! This worked perfectly. luce On 9 Dec, 2011, at 2:31 PM, Dave Clements wrote: > Hi Luce, > > I'm forwarding this question to the Galaxy-User mailing list, as I think this > is a pretty common situation. > > Here's how I replace text in a column. It's a two step process for each > dat

Re: [galaxy-user] Text Editing

2011-12-09 Thread Dave Clements
Hi Luce, I'm forwarding this question to the Galaxy-User mailing list, as I think this is a pretty common situation. Here's how I replace text in a column. It's a two step process for each dataset. First go to Text Manipulation -> Compute. In the Add expression text box enter columnNum.repl

[galaxy-user] Text Editing

2011-12-09 Thread Jennifer Jackson
Hello Luce, I can explain the use of the tools "Text Manipulation". For each file independently, the following steps will rename the "name" identifier in column 4. I don't believe that there a more direct method, but you may discover one. This type of customization is why the tools are distinc

Re: [galaxy-user] Cucumber genome

2011-12-09 Thread Dannon Baker
Changlong, Lastz (and many other tools) allow you to select a reference from your history instead of picking one of Galaxy's built-in references. To do this, upload your reference and then when you run Lastz select "in your history" for the reference location, and pick your uploaded file as th

[galaxy-user] Cucumber genome

2011-12-09 Thread changlong wen
Hi, In the NGS mapping option with "lastz" I cannot find the Cucumber genome.* *Could you please make this reference genome available? Or we have the reference sequence. How to add them in in the local server? Many thanks. Have a good day. Best regards changlong _