Hi Folks,
I could use some help on adding a tool to the cloud version of Galaxy. The
Cloud startup process creates, among other things,
/mnt/galaxyTools/galaxy-central which has tools_conf.xml, and subdir tools
etc. This seems not accessible before starting the cloud. I assume I need
to add my too
Hello all,
Plant and Animal Genome XX (PAG2012) starts in San Diego on January 14. If
you are attending PAG then you will have (at least) a half-dozen
opportunities to learn more about Galaxy and how it is being used to
support research. There will be workshops introducing Galaxy, and on
deploying
Hello Kenneth,
Most tools that use a reference genome will accept a custom reference
genome, including the visualization tool to create a custom browser. The
recommendation is to:
1 - load the genome in FASTA format into your working history using FTP
http://wiki.g2.bx.psu.edu/Learn/Uplo
Hello John,
Conditionals and other workflow job control functions have been
discussed by the team recently. I have opened a bitbucket ticket to hold
ideas from the team and community. Please feel free to add comments for
your specific use case. This ticket would also be a good place for you
t
Hi,
Would be grateful I the following genomes were uploaded into Galaxy
Streptomyces coelicolor A3(2) ;
ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Streptomyces_coelicolor_A3_2__uid57801/NC_003888.gbk
Propionibacterium acnes KPA171202 (pre-salt downshift);
ftp://ftp.ncbi.nih.gov/genomes/Bacteria/P
Hi Eric,
UCSC has many details on their web site about how to customize color
coding in BAM data, please see:
http://genome.ucsc.edu/goldenPath/help/bam.html
http://genome.ucsc.edu/goldenPath/help/hgBamTrackHelp.html
The Text Manipulation tools in Galaxy may be helpful for certain steps
and
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