[galaxy-user] RNA-Seq analysis

Since the pictures are too big for the mailling list. I will upload it in seperate emails. Dear all, I am using Galaxy for RNA-Seq analysis. I expect two lists: differentially expressed transcripts and differentially expressed genes. In these two lists, I would like to see the gene name, gene

[galaxy-user] Question about uploading custom index for bowtie

I recently tried to upload a custom made index for bowtie using Filezilla as my FTP source, but I got an error message, I think due to the autodetect for file type not recognizing this file type. Is there something special that I should do to upload my six .ebwt files for my reference?

Re: [galaxy-user] Question about uploading custom index for bowtie

Hello William, To use a custom reference genome, all you need to upload is the single fasta file for the genome. Galaxy will do the rest and create indexes as appropriate. Hopefully this helps! Thanks, Jen Galaxy team On 2/6/12 11:51 AM, William Light wrote: I recently tried to upload a