Re: [galaxy-user] [galaxy-dev] History not updating for multiple instances of Galaxy
On Thursday, February 21, 2013, wrote: Further, when I try “register” I add an email address and password, but the system still doesn’t log me in ** ** Maybe this is a database configuration issue? ** ** I didn’t think I’d need to state any specific entries in universe as I am using physically separate directories ** ** i.e. /home/galaxy/galaxy-cte/ i.e. /home/galaxy/galaxy-Newcastle/ ** ** Cheers Neil The logging in problem sounds like a cookie path issue to me, I had something similar when I added second public Galaxy to our server (in my case, a live on and a dev one). Peter ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-user] Installing Galaxy on ARM Architecture
Hi, I am trying to install Galaxy on an ARMV7 architecture Linux server. I ran run.sh and failed because some of the python eggs could not be fetched. I then have a look at http://eggs.galaxyproject.org/; and I have realized there aren't any armv7 builds for those eggs. I then decided to build (or scramble) the eggs on my own. I ran scripts/scramble.py and this also failed with the following message (after building a lot of things): scramble(): Copied egg to: /nfs/users/galaxy_dist/eggs/twill-0.9-py2.7.egg Traceback (most recent call last): File scripts/scramble.py, line 26, in module eggs = c.scramble() File /nfs/users/galaxy_dist/lib/galaxy/eggs/scramble.py, line 242, in scramble raise last_exc # only 1 failure out of the crate, be more informative galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for bx_python 0.7.1 May I ask what may cause this problem? Have I done anything wrong? Or, is it even possible to install Galaxy on ARM architecture Linux? Many thanks, Shun ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Installing Galaxy on ARM Architecture
You are definitely in uncharted territory with an arm server. Can you try building just bx-python itself and let us know what the errors are? -- James Taylor, Assistant Professor, Biology/CS, Emory University On Thu, Feb 21, 2013 at 11:03 AM, Shun Liang shun.li...@cruk.cam.ac.uk wrote: Hi, I am trying to install Galaxy on an ARMV7 architecture Linux server. I ran run.sh and failed because some of the python eggs could not be fetched. I then have a look at http://eggs.galaxyproject.org/; and I have realized there aren't any armv7 builds for those eggs. I then decided to build (or scramble) the eggs on my own. I ran scripts/scramble.py and this also failed with the following message (after building a lot of things): scramble(): Copied egg to: /nfs/users/galaxy_dist/eggs/twill-0.9-py2.7.egg Traceback (most recent call last): File scripts/scramble.py, line 26, in module eggs = c.scramble() File /nfs/users/galaxy_dist/lib/galaxy/eggs/scramble.py, line 242, in scramble raise last_exc # only 1 failure out of the crate, be more informative galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for bx_python 0.7.1 May I ask what may cause this problem? Have I done anything wrong? Or, is it even possible to install Galaxy on ARM architecture Linux? Many thanks, Shun ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Installing Galaxy on ARM Architecture
Sorry just forgot to CC the mailing list. Hi James, I followed the manual installation instruction on https://bitbucket.org/james_taylor/bx-python/wiki/HowToInstall;, and surprisingly, bx-python seems to be built on the ARM server without any problem: Installed /nfs/users/bx-python/lib/python/bx_python-0.7.1-py2.7-linux-armv7l.egg Processing dependencies for bx-python==0.7.1 Finished processing dependencies for bx-python==0.7.1 Regards, Shun From: ja...@taylorlab.org [ja...@taylorlab.org] on behalf of James Taylor [ja...@jamestaylor.org] Sent: 21 February 2013 16:07 To: Shun Liang Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Installing Galaxy on ARM Architecture You are definitely in uncharted territory with an arm server. Can you try building just bx-python itself and let us know what the errors are? -- James Taylor, Assistant Professor, Biology/CS, Emory University On Thu, Feb 21, 2013 at 11:03 AM, Shun Liang shun.li...@cruk.cam.ac.uk wrote: Hi, I am trying to install Galaxy on an ARMV7 architecture Linux server. I ran run.sh and failed because some of the python eggs could not be fetched. I then have a look at http://eggs.galaxyproject.org/; and I have realized there aren't any armv7 builds for those eggs. I then decided to build (or scramble) the eggs on my own. I ran scripts/scramble.py and this also failed with the following message (after building a lot of things): scramble(): Copied egg to: /nfs/users/galaxy_dist/eggs/twill-0.9-py2.7.egg Traceback (most recent call last): File scripts/scramble.py, line 26, in module eggs = c.scramble() File /nfs/users/galaxy_dist/lib/galaxy/eggs/scramble.py, line 242, in scramble raise last_exc # only 1 failure out of the crate, be more informative galaxy.eggs.scramble.ScrambleFailure: run_scramble_script(): Egg build failed for bx_python 0.7.1 May I ask what may cause this problem? Have I done anything wrong? Or, is it even possible to install Galaxy on ARM architecture Linux? Many thanks, Shun ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
