[galaxy-user] What is the quality score type for the Solid datasets downloaded from SRA of NCBI?

Hi all, Please help with the quality score type for the downloaded Solid datasets. I downloaded RNA-seq datasets, which were generated by AB Solid system, as base space and at FastQ format from SRA of NCBI. I uploaded the datasets onto the online sever Galaxy and change the datatype directly into

Re: [galaxy-user] What is the quality score type for the Solid datasets downloaded from SRA of NCBI?

Hello Jianguang, The tool NGS: QC and manipulation - FASTQ Groomer has some information about this, including a link to a wikipedia entry with more details specifically about the SRA: http://en.wikipedia.org/wiki/FASTQ_format

[galaxy-user] Local galaxy install vs cloudman

Hello, The cloud version of Galaxy is quite easy to fire up and is very complete with all tools and genomes preinstalled. Local installation on the other hand is painful, contrary to the nice descriptions among the wiki pages. For exmples, see this:

Re: [galaxy-user] Local galaxy install vs cloudman

H Jim, The components for the cloud version are built in an automated fashion using CloudBioLinux scripts (https://github.com/chapmanb/cloudbiolinux) so maybe using those can get you closer to what you're after? Cheers, Enis On Wed, Mar 6, 2013 at 5:17 AM, James Vincent j...@uvm.edu wrote: