Re: [galaxy-user] Rename tool output file in Galaxy

2013-07-24 Thread Peter Cock
On Wed, Jul 24, 2013 at 5:21 AM, Sachit Adhikari sachit.techner...@gmail.com wrote: Hi group, The galaxy stores the output of the job on files/043/dataset_ID.dat. I have two questions here.: 1) Can I find the ID of my output from the Galaxy history? I tried Edit Attributes, Annotations,

Re: [galaxy-user] Rename tool output file in Galaxy

2013-07-24 Thread Sachit Adhikari
Hi, By i do you mean Edit attributes button? There are four sub-headings on that: Attributes, Convert format, Datatype and permissions but I can't see data file's full path on any of them. What's wrong? On Wed, Jul 24, 2013 at 3:05 PM, Peter Cock p.j.a.c...@googlemail.comwrote: On Wed, Jul

Re: [galaxy-user] Rename tool output file in Galaxy

2013-07-24 Thread Peter Cock
On Wed, Jul 24, 2013 at 10:35 AM, Sachit Adhikari sachit.techner...@gmail.com wrote: Hi, By i do you mean Edit attributes button? There are four sub-headings on that: Attributes, Convert format, Datatype and permissions but I can't see data file's full path on any of them. What's wrong? No,

Re: [galaxy-user] Rename tool output file in Galaxy

2013-07-24 Thread Sachit Adhikari
Yes, but unfortunately that didn't work too. I have already tried the solution you provided. I could edit the tags and annotations but it won't change the file name in my file system. The file is still named as * dataset_43649.dat. * On Wed, Jul 24, 2013 at 3:52 PM, Peter Cock

Re: [galaxy-user] Rename tool output file in Galaxy

2013-07-24 Thread Peter Cock
On Wed, Jul 24, 2013 at 11:15 AM, Sachit Adhikari sachit.techner...@gmail.com wrote: Yes, but unfortunately that didn't work too. I have already tried the solution you provided. I could edit the tags and annotations but it won't change the file name in my file system. The file is still named as

Re: [galaxy-user] Rename tool output file in Galaxy

2013-07-24 Thread Sachit Adhikari
Thanks Peter for clearing this out. On Wed, Jul 24, 2013 at 4:33 PM, Peter Cock p.j.a.c...@googlemail.comwrote: On Wed, Jul 24, 2013 at 11:15 AM, Sachit Adhikari sachit.techner...@gmail.com wrote: Yes, but unfortunately that didn't work too. I have already tried the solution you provided.

Re: [galaxy-user] Rename tool output file in Galaxy

2013-07-24 Thread Ross
Sachit, that's a feature, not a bug. Changing the name of a file on disk being managed by Galaxy is unlikely to have a happy ending. The pencil icon allows changes to the history display name but the disk file name needs to be left alone. On Wed, Jul 24, 2013 at 8:15 PM, Sachit Adhikari

[galaxy-user] queue rules for multi-step workflows

2013-07-24 Thread zuzmus
Dear Galaxy managers, I would like to ask about the queuing rules for the workflows before processed on the server? I use my customized Galaxy workflow which contains 22 following steps (basically, filtering, trimming and format change of NGS data). I guess the server is generally very busy