[galaxy-user] Help: Mapping with Bowtie does not start
Hello, I am trying to map sequences with Bowtie for Illumina. I have been waiting for a whole day now but it still says Job is waiting to run. Are the jobs stuck in a queue or is there any other problem? Thanks a lot in advance! Meike ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-user] Galaxy - error
Dear Malito, I am PhD student and I am working with a bacterial transcriptome. A few days ago, i have a problem to obtain data in DESeq and Edge-r on the plataform galaxy. I get the message no peek at the end of the process, even with the task g reen. Have you had this problem? I would like to find a solution... Thank you, -- Flavia Figueira Aburjaile ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-user] Compute an expression
Hello Hamid, Try using the Filter and Sort - Filter tool instead and see if that produces the output you expect. This same query syntax should be fine (no quotes). Best, Jen Galaxy team On 2/27/14 2:14 AM, Hamid Qaedi wrote: Dear All I have a tabular file and using compute (version 1.1.0) tool under text manipulation menu, I 'm going to do a computation to find rows in which column2 and 3 (c2 and c3) are similar in values (values are A,T,C and G) . It seems the syntax for doing that is c2==c3, but it dosent work. Can anybody help? Any help would be appreciated. Hamid ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ -- Jennifer Hillman-Jackson http://galaxyproject.org ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using reply all in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
