:08 PM
To: Irene Bassano
Cc: galaxy-b...@bx.psu.edu
Subject: Re: [galaxy-bugs] Galaxy tool error report from b...@leeds.ac.uk
Hello,
iGenomes covers the UCSC build, and this named Human Feb. 2009
(GRCh37/hg19) (hg19) in the full name in the UI. The hg19 key is the
important part - as the name may
Hi Jen,
I uploaded some fastq files and selected as Genome from the drop down list
Homo sapiens b37(hg_g1k_v37).
Is this the same as the genome listed in UCSC February 2009 (GRCh37/hg19)?
I am using iGenomes to get the gene names rather than annotation such as
NM_00 and I fused the UCSC
Thanks a lot Jen!
Irene
From: Jennifer Jackson [j...@bx.psu.edu]
Sent: Saturday, November 16, 2013 6:57 PM
To: Irene Bassano
Cc: galaxy-u...@bx.psu.edu
Subject: Re: [galaxy-user] FW: Tophat/Cuff parameters
Hi,
Yes, the .py part of the wrapper you
options but if some of them wont affect
the final reaults then is not worth changing them.
Thanks,
Irene
From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: 14 November 2013 21:43
To: galaxy-user
Cc: Irene Bassano
Subject: Tophat/Cuff parameters
Hello,
Yes, this is correct, not all parameters can
HI guys,
how do we know when to select a refernce annotation when running cufflinks?And
if yes, which one from UCSC should we chose: refgene or knowngenes?
Thanks,
ib
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Hi,
just few questions about cuffdiff if anyone can answer:
1.how can I load more than two sam/bam files?Galaxy gives spaceonly for two
files
2.what to use as input: cufflinks, cuffcompare or cuffmerge?
Thanks a lot!
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