Re: [galaxy-user] galaxy-user Digest, Vol 89, Issue 4

[Cory Dunn]

Dear Graham,

Thanks for the info.  However, my problem is that the Tool Version field
is completely empty in my history items (eg. Tophat2, Cuffdiff).  I suppose
I can check the dependancies list you described, but it would be important
to know precisely which version was run on any given query.

Best regards,
Cory

Message: 3
 Date: Tue, 5 Nov 2013 09:45:19 +
 From: graham etherington (TSL)
 graham.ethering...@sainsbury-laboratory.ac.uk
 To: Cory Dunn cd...@ku.edu.tr, galaxy-u...@bx.psu.edu
 galaxy-u...@bx.psu.edu
 Subject: Re: [galaxy-user] Cuffdiff version not apparent
 Message-ID:
 ce9e6d0a.21768%graham.ethering...@sainsbury-laboratory.ac.uk
 Content-Type: text/plain; charset=Windows-1252

 Hi Cory,
 A list of Galaxy dependancies can be found on the wiki at:
 http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies
 ...although many tools allow a range of tool versions.

 You can also identify the information about the specific tool versions by
 clicking on the View Details ?i? icon of a history item created by that
 tool and looking at the Tool Version field.
 If you?re using the Galaxy public server (https://usegalaxy.org/) then
 clicking on the ?i? icon of a cuffdiff output file will show:

 Tool Version:cuffdiff v2.1.1 (4046M)
 Hope this helps.

 Cheers,
 Graham

___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

[galaxy-user] Cuffdiff version not apparent

[Cory Dunn]

Dear Galaxy Staff:

I was wondering which version of Cuffdiff is currently running on Galaxy.
 The wrapper version is 0.0.6, but I did not see the actual version of the
underlying software under the Tool Version field (please see attached
screen grab).

Thanks for your help,
Cory Dunn


[image: Inline image 1]
image.png___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/