[galaxy-user] Galaxy down?

Hi, is there currently a problem with the Galaxy Server? When will it be up again? thx, Felix ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please

[galaxy-user] Bowtie Job doesn't start

Hi, just trying to use Bowtie, but the job does not start. Is there somthing wrong with the server at the moment? Felix ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at

Re: [galaxy-user] upload of Zea mays genome to galaxy?

Last time I checked there was an up to date zea mays genome already available in galaxy. Am 05.03.2011 21:49, schrieb karlerh...@berkeley.edu: Hello, I'm interested in using the galaxy tools to analyze some transcriptome libraries I made of maize seedlings. Would it be possible to upload the

[galaxy-user] Cleaning of fastq files

Hi, is there a way to clean fastq files (filter Poly-A etc.) with Galaxy? Haven't found anything so far. Also if you generally know good tools plz answer. Have seen lots of stuff for fasta and qual files but not for fastq. Thx, Felix ___ The Galaxy

Re: [galaxy-user] Text Manipulation

Hi Peter, sounds nice, would be a great feature. For everyone else how is not using a custom server: if you are lucky you can use the trim tool on tabs to solve your problem. If you want to add text to the beginning or end of a column: - Use add column and add the text as a new column - Then use

[galaxy-user] Group and hide steps in history/workflow

Hi, it would be really nice if I could take a work flow and save it as a tool. This way one could easily build custom text-manipulation tools from already existing text tools. I already have a work flow that does a conversion job. But it has lots of of steps that make my histories quite messy

[galaxy-user] SAM to GFF ?

Hi, is there an easy way to use Galaxy to convert SAM to GFF? thx, Felix ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. For discussion of local Galaxy instances and

[galaxy-user] GeneTrack Server Error

Hi, I am trying to view Converted Interval Data in GeneTrack, but all I get is Server Error An error occurred. See the error logs for more information. (Turn debug on to display exception reports here) thx, Felix ___ The Galaxy User list should be

[galaxy-user] Mapping does not start

Hi, I am trying to map sequences with Bowtie. Have been waiting for a few hours now but it still says Job is waiting to run. A few days ago I didn't have this problem and the job started immediately. My guess is that the jobs are still stuck in a queue? How can I tell when the jobs will