Re: [galaxy-user] new cuffdiff with readgroup problem

, November 15, 2013 10:23 PM To: Johanna Sandgren Cc: galaxy-user@lists.bx.psu.edu; Jeremy Goecks Subject: Re: [galaxy-user] new cuffdiff with readgroup problem Hi Johanna, Update: I had this incorrect, the option to include Read Group files in the output is now available and near the bottom

Re: [galaxy-user] new cuffdiff with readgroup problem

for replicate plotting in CummeRbund then? When will you also include them in your output? Regards, Johanna From: Jennifer Jackson [mailto:j...@bx.psu.edu] Sent: Thursday, October 31, 2013 4:09 AM To: Johanna Sandgren Cc: galaxy-user@lists.bx.psu.edu; Jeremy Goecks Subject: Re: [galaxy-user] new cuffdiff

[galaxy-user] new cuffdiff with readgroup problem

.. Johanna Sandgren, PhD Department of Oncology-Pathology CCK, Karolinska Institutet SE-171 76 Stockholm, Sweden +46-8-517 721 35 (office), +46-8- 321047(fax), +46-708 388476 (mobile

[galaxy-user] New cuffdiff- no result files

for paired-end reads) No .. Johanna Sandgren, PhD Department of Oncology-Pathology CCK, Karolinska Institutet SE-171 76 Stockholm, Sweden +46-8-517

Re: [galaxy-user] Cuffdiff changes

look forward to the update, will that mean another version of Cuffdiff again? Kind regards, Johanna From: Jeremy Goecks [mailto:jeremy.goe...@emory.edu] Sent: Thursday, August 22, 2013 8:04 PM To: Johanna Sandgren Cc: galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Cuffdiff changes I am

[galaxy-user] Cuffdiff changes

Length Standard Deviation 80 .. Johanna Sandgren, PhD Department of Oncology-Pathology CCK, Karolinska Institutet SE-171 76 Stockholm, Sweden +46-8

[galaxy-user] replicates in cuffdiff output

it very valuable to have those to be able to see intra/inter-group features in downstream analysis. Thanks, Johanna .. Johanna Sandgren, PhD Department